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ma_ko id:ma_ko

RDFã«é–¢ã™ã‚‹ma_koã®ãƒ–ãƒƒã‚¯ãƒžãƒ¼ã‚¯ (10)

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BioCodefest2014
toshiaki katayama @tktym ã‚±ãƒ³ãƒ–ãƒªãƒƒã‚¸å¤§å¦ã®Cambridge Systems Biology Centre (CSBC)ã®Gosã•ã‚“ã®ãƒ©ãƒœã«å¯„ã‚‰ã›ã¦é ‚ãã€æ»žã£ã¦ã„ãŸBH13è«–æ–‡ã®TODOã‚’æ•´ç†ã€‚ã“ã‚Œã‹ã‚‰è»½ãé£²ã‚“ã§å¸°å›½ã¸ã€‚ 2014-09-21 00:16:55 toshiaki katayama @tktym BioNode/Datã®å§‹ã‚æ–¹ã‚„JSON-LDã‚„NCBIé€£æºã‚„ã€ã€ã—ãŸã‹ã£ãŸã“ã¨è‰²ã€…ã‚„ã‚Šæ®‹ã—ã¤ã¤æ™‚é–“åˆ‡ã‚Œã€‚ã‚„ã¯ã‚Šãƒãƒƒã‚«ã‚½ãƒ³ã¯æœ€ä½Ž5æ—¥é–“ãã‚‰ã„æ¬²ã—ã„ãªï½žã€‚ã¨ã‚‚ã‚ã‚Œã¨ã¦ã‚‚æœ‰æ„ç¾©ã§ã—ãŸï¼æ¥å¹´ã¯ISMB/BOSCã¨â€¦ instagram.com/p/tIlTKZo6Cs/ 2014-09-20 01:39:37
ma_ko 2014/09/24
"TogoGenomeã«æœ€è¿‘è¿½åŠ ã—ãŸID Resolver togogenome.org/resolver ã¨ Converter togogenome.org/converter"

RDF
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ç›´æ„ŸRDF!!ã€€ãã®3 -å¤–éƒ¨ã®ãƒ‡ãƒ¼ã‚¿ã¨ç¹‹ã’ã¦ä½¿ãˆã‚‹æ¤œç´¢ã‚’ã—ã‚ˆã†ã€‚ - maoring blog
ã•ã¦ï¼Œå‰å›žã¾ã§ã®ç›´æ„ŸRDF!ã§RDFã®æ¦‚è¦ã‚’å¦ã³ï¼Œã‚¤ã‚«ã‚·ã‚¿RDFã‚’ä½œæˆã—ãŸã‚Šï¼Œæƒ…å ±åŽé›†ã™ã‚‹æ–¹æ³•ã‚’ç´¹ä»‹ã—ã¾ã—ãŸã€‚ä»Šå›žã¯ï¼Œå¤–éƒ¨ã®ãƒ‡ãƒ¼ã‚¿ã¨ç¹‹ã’ã¦æ¤œç´¢ã™ã‚‹æ–¹æ³•ã‚’ã”ç´¹ä»‹ã—ã¾ã™ã€‚ ç›®çš„ãƒ¼ä½•ã™ã‚‹ã®ï¼Ÿ ä»Šå›žã¯ä»Šã¾ã§ä½œæˆã—ãŸRDFã®ãƒ‡ãƒ¼ã‚¿ã‚’ä½¿ã£ã¦ï¼Œè–¬ã®ã‚¿ãƒ¼ã‚²ãƒƒãƒˆæƒ…å ±ã‚„ï¼Œç‰¹è¨±æƒ…å ±ã‚’å–å¾—ã™ã‚‹ã¾ã§ã‚’æ›¸ã„ã¦ã„ããŸã„ã¨æ€ã„ã¾ã™ã€‚ å¤–éƒ¨ã®ãƒ‡ãƒ¼ã‚¿ã®ã“ã¨ã‚’çŸ¥ã‚ã†ã€‚ å¤–éƒ¨ã®ãƒ‡ãƒ¼ã‚¿ã¨ç¹‹ã’ã¦ã„ããŸã‚ã«ã¯ï¼Œå¤–éƒ¨ã®RDFãƒ‡ãƒ¼ã‚¿ã«ã¤ã„ã¦çŸ¥ã‚‹å¿…è¦ãŒã‚ã‚Šã¾ã™ã€‚ã“ã“ã§ã¯ï¼Œè–¬ã®ã‚¿ãƒ¼ã‚²ãƒƒãƒˆæƒ…å ±ãŒçŸ¥ã‚ŠãŸã„ã®ã§ï¼Œbio2rdfã§æä¾›ã•ã‚Œã¦ã„ã‚‹drugbankã®æƒ…å ±ã‚’è¦‹ã¦ã¿ã¾ã—ã‚‡ã†ã€‚bio2rdfã®ãƒˆãƒƒãƒ—ãƒšãƒ¼ã‚¸ã‹ã‚‰ï¼ŒVioxx [drugbank:DB00533 ]ã‚’é¸æŠžã—ã¾ã™ã€‚å³ã®æ¤œç´¢çª“ã«ï¼Œdrugbank:DB00143ãŒè¡¨ç¤ºã•ã‚Œã‚‹ã¨æ€ã†ã®ã§ã™ãŒï¼Œã“ã‚Œã‚’è‡ªåˆ†ã®æ‰‹æŒã¡ã®ãƒ‡ãƒ¼ã‚¿ã®drugbank ID - ã“ã“ã§ã¯ï¼Œ drugbank:DB00864
ma_ko 2014/09/24
RDF
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ç›´æ„ŸRDF!!ã€€ãã®2 -ä½¿ã„ã‚„ã™ã„RDFã‚’ä½œã£ã¦ï¼Œæ¤œç´¢ã—ã‚ˆã†ã€‚ - maoring blog
ç›´æ„Ÿã‚·ãƒªãƒ¼ã‚ºç¬¬äºŒå¼¾ï¼Œãã®ï¼’ã§ã™ã€‚ãˆã£ã¨ï¼Œæ¬¡ã¯æ›¸ãã¨ã„ã„ãªãŒã‚‰ï¼Œ300æ—¥å¼±ã®æ™‚ãŒéŽãŽã¾ã—ãŸã€‚ãªã‚“ã‚„ã¦ï¼ï¼ˆã‚¨ã‚»é–¢è¥¿å¼ï¼‰ã€‚ã‚ã‚‹ç¨‹åº¦ãƒã‚¿ãŒé›†ã¾ã£ãŸã®ã§æ›¸ã„ã¦ã„ãã“ã¨ã«ã—ã¾ã™ã€‚ æ‰‹æŒã¡ã®ãƒ‡ãƒ¼ã‚¿ã‚’RDFåŒ–ã—ã‚ˆã†ã€‚ å®Ÿéš›ã«RDFã‚’ä»–ã®RDFã¨çµ±åˆã—ã‚ˆã†ã¨æ€ã£ãŸã‚‰æ‰‹å…ƒã®ãƒ‡ãƒ¼ã‚¿ã®RDFåŒ–ãŒå¿…è¦ã§ã™ã€‚RDFè‡ªä½“ã®èª¬æ˜Žã¯å‰å›žã®ã‚¨ãƒ³ãƒˆãƒªã‚’ã”è¦§é ‚ãã¨ã—ã¦ï¼Œã“ã“ã§ã¯ï¼Œã“ã‚“ãªãƒ‡ãƒ¼ã‚¿ã‚’ç”¨æ„ã—ã¦ã¿ã¾ã—ãŸã€‚ã‚ã‚‹è–¬ã®ãƒ‡ãƒ¼ã‚¿ã§ã™ã€‚ã‚·ãƒãƒ¥ã‚¨ãƒ¼ã‚·ãƒ§ãƒ³ã¨ã—ã¦ã¯ï¼Œã‚ã‚‹ç ”ç©¶æ‰€ã®ç ”ç©¶æ”¯æ´éƒ¨ï¼ˆã‚ãã¾ã§Fictionã«ã—ã¦ã‚ã’ã¦ãã ã•ã„ï¼‰ãŒæ”¯æ´ã—ã¦ã„ã‚‹è–¬ã®ãƒ‡ãƒ¼ã‚¿ã‚’RDFåŒ–ã—ãŸã¨ã—ã¾ã™ã€‚ä¸èº«ã¯ï¼Œã‚ã‚‹è–¬ã‚’åŸºæº–ã¨ã—ã¦ï¼Œãã®åå‰ï¼Œè£½å“åï¼ŒdrugbankIDï¼Œç–¾æ‚£åï¼Œç–¾æ‚£åˆ†é¡žã§ã‚ã‚‹icd10ã®IDã‚’ã¤ã‘ã¦ã„ã¾ã™ã€‚rdfï¼ˆè¨˜æ³•ã¯ttlå½¢å¼ï¼‰ã®ä¸èº«ã¯ã“ã†ãªã‚Šã¾ã™ã€‚ @prefix drugbank: <http://bio2rdf.org/drugbank
ma_ko 2014/09/24
RDF
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OpenRefineã‚’ä½¿ã£ã¦ä»–ã®ã‚µã‚¤ãƒˆã‹ã‚‰ãƒ‡ãƒ¼ã‚¿ã‚’å–å¾—ã™ã‚‹ - xiaodong's memo
Web APIã‚’ä½¿ãˆã°ä»–ã®ã‚µã‚¤ãƒˆã‹ã‚‰ãƒ‡ãƒ¼ã‚¿ã‚’å–å¾—ã§ãã‚‹ã¨ã„ã†ã“ã¨ã¯ç†è§£ã—ã¦ã„ã¦ã‚‚ï¼Œå®Ÿéš›ã«ã©ã†ãƒ—ãƒã‚°ãƒ©ãƒŸãƒ³ã‚°ã™ã‚Œã°ã‚ˆã„ã®ã‹ã‚ã‹ã‚‰ãšï¼Œè‡ªåˆ†ã§APIã‚’æ´»ç”¨ã™ã‚‹ã¨ã„ã†ã¨ã“ã‚ã¾ã§ã¯ã§ãã¦ã„ã¾ã›ã‚“ã§ã—ãŸã€‚ ãã‚“ãªã¨ãï¼ŒãŸã¾ãŸã¾OpenRefine ã¨ã„ã†ãƒ‡ãƒ¼ã‚¿åˆ†æžãƒ»æ•´å½¢ã‚½ãƒ•ãƒˆã®å˜åœ¨ã‚’çŸ¥ã£ã¦ï¼Œã‚ã‚Šã¨ç°¡å˜ã«ãƒ‡ãƒ¼ã‚¿ã‚’å–å¾—ã™ã‚‹ã“ã¨ãŒã§ããŸã®ã§ï¼Œå‚™å¿˜ã®ãŸã‚è¨˜éŒ²ã—ã¦ãŠããŸã„ã¨æ€ã„ã¾ã™ã€‚ è©¦ã—ã«ä»Šå›žã¯NDLã‚µãƒ¼ãƒã®APIã‚’ä½¿ç”¨ã—ã¦NDLBibIDã‹ã‚‰JPNOã‚’å–å¾—ã™ã‚‹ã¨ã„ã†ã“ã¨ã‚’ã—ã¦ã¿ã¾ã—ãŸã€‚å®Ÿéš›ã«ãƒ‡ãƒ¼ã‚¿ã‚’å–å¾—ã§ããŸã¨ãã¯å¬‰ã—ã‹ã£ãŸã§ã™ã€‚ 1. OpenRefine ã‚’ã‚¤ãƒ³ã‚¹ãƒˆãƒ¼ãƒ« OpenRefine http://openrefine.org/ æ—¥æœ¬èªžã®è§£èª¬å‹•ç”»ã‚‚ã‚ã‚Šã¾ã™ã€‚ http://www.youtube.com/watch?v=ROW-ZNkk3E8 http://www.youtube.com/wat
ma_ko 2013/12/26
API

RDF

programming
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http://biolod.org/databaselist?q=&startAlphabet=ALL&sortMethod=download+times&currentPage=1&showMode=project&numOfResult=20&selectedClassIdDetail=&currentPageDetail=&numOfResultDetail=&selecSortMethod=false
ma_ko 2012/02/25
RDF

database
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Bio2RDF v2.7a
Linked Data for the Life Sciences about datasets download API SPARQL query repository mailing list Powered by Docker, PHP, and Virtuoso Open-Source Edition
ma_ko 2012/02/25
RDF

database
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Visualizing RDF Schema inferencing through Neo4J, Tinkerpop, Sail and Gephi - Datablend
Last week, the Neo4J plugin for Gephi was released. Gephi is an open-source visualization and manipulation tool that allows users to interactively browse and explore graphs. The graphs themselves can be loaded through a variety of file formats.Last week, the Neo4J plugin for Gephi was released. Gephi is an open-source visualization and manipulation tool that allows users to interactively browse an
ma_ko 2012/01/24
RDF

visualization
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Resource Description Framework - Wikipedia
è‹±èªžç‰ˆè¨˜äº‹ã‚’æ—¥æœ¬èªžã¸æ©Ÿæ¢°ç¿»è¨³ã—ãŸãƒãƒ¼ã‚¸ãƒ§ãƒ³ï¼ˆGoogleç¿»è¨³ï¼‰ã€‚ ä¸‡ãŒä¸€ç¿»è¨³ã®æ‰‹ãŒã‹ã‚Šã¨ã—ã¦æ©Ÿæ¢°ç¿»è¨³ã‚’ç”¨ã„ãŸå ´åˆã€ç¿»è¨³è€…ã¯å¿…ãšç¿»è¨³å…ƒåŽŸæ–‡ã‚’å‚ç…§ã—ã¦æ©Ÿæ¢°ç¿»è¨³ã®èª¤ã‚Šã‚’è¨‚æ£ã—ã€æ£ç¢ºãªç¿»è¨³ã«ã—ãªã‘ã‚Œã°ãªã‚Šã¾ã›ã‚“ã€‚ã“ã‚ŒãŒæˆã•ã‚Œã¦ã„ãªã„å ´åˆã€è¨˜äº‹ã¯å‰Šé™¤ã®æ–¹é‡G-3ã«åŸºã¥ãã€å‰Šé™¤ã•ã‚Œã‚‹å¯èƒ½æ€§ãŒã‚ã‚Šã¾ã™ã€‚ ä¿¡é ¼æ€§ãŒä½Žã„ã¾ãŸã¯ä½Žå“è³ªãªæ–‡ç« ã‚’ç¿»è¨³ã—ãªã„ã§ãã ã•ã„ã€‚ã‚‚ã—å¯èƒ½ãªã‚‰ã°ã€æ–‡ç« ã‚’ä»–è¨€èªžç‰ˆè¨˜äº‹ã«ç¤ºã•ã‚ŒãŸæ–‡çŒ®ã§æ£ã—ã„ã‹ã©ã†ã‹ã‚’ç¢ºèªã—ã¦ãã ã•ã„ã€‚ å±¥æ´ç¶™æ‰¿ã‚’è¡Œã†ãŸã‚ã€è¦ç´„æ¬„ã«ç¿»è¨³å…ƒã¨ãªã£ãŸè¨˜äº‹ã®ãƒšãƒ¼ã‚¸åãƒ»ç‰ˆã«ã¤ã„ã¦è¨˜è¿°ã™ã‚‹å¿…è¦ãŒã‚ã‚Šã¾ã™ã€‚è¨˜è¿°æ–¹æ³•ã«ã¤ã„ã¦ã¯ã€Wikipedia:ç¿»è¨³ã®ã‚¬ã‚¤ãƒ‰ãƒ©ã‚¤ãƒ³#è¦ç´„æ¬„ã¸ã®è¨˜å…¥ã‚’å‚ç…§ãã ã•ã„ã€‚ ç¿»è¨³å¾Œã€{{ç¿»è¨³å‘ŠçŸ¥|en|Resource Description Framework|â€¦}}ã‚’ãƒŽãƒ¼ãƒˆã«è¿½åŠ ã™ã‚‹ã“ã¨ã‚‚ã§ãã¾ã™ã€‚ Wikipedia:ç¿»è¨³ã®ã‚¬ã‚¤ãƒ‰ãƒ©ã‚¤ãƒ³ã«ã€ã‚ˆã‚Šè©³ç´°ãª
ma_ko 2012/01/24
RDF
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Welcome to the NCBO BioPortal | NCBO BioPortal
The National Center for Biomedical Ontology was founded as one of the National Centers for Biomedical Computing, supported by the NHGRI, the NHLBI, and the NIH Common Fund under grant U54-HG004028.
ma_ko 2009/05/06
BioPortal is a Web-based application for accessing and sharing biomedical ontologies.

database

bioinformatics

RDF
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Piggy Bankã§ã‚»ãƒžãƒ³ãƒ†ã‚£ãƒƒã‚¯ãƒ»ã‚¦ã‚§ãƒ–ã‚’ä½“é¨“ã™ã‚‹ | OSDN Magazine
Resource Description Frameworkï¼ˆRDFï¼‰ã‚„ã‚»ãƒžãƒ³ãƒ†ã‚£ãƒƒã‚¯ãƒ»ã‚¦ã‚§ãƒ–ã‚’å·¡ã‚‹è©±é¡Œã«ã¤ã„ã¦è¡Œã‘ãªã„äººã«ã€æœ—å ±ã§ã‚ã‚‹ã€‚Piggy Bankã‚’ä½¿ãˆã°ã€ç¾è¡Œã®Webãƒ–ãƒ©ã‚¦ã‚¶ã§ã‚»ãƒžãƒ³ãƒ†ã‚£ãƒƒã‚¯ãƒ»ã‚¦ã‚§ãƒ–ã‚’ä½“é¨“ã§ãã‚‹ã®ã ã€‚ Piggy Bankï¼ˆã€Œè±šã®å½¢ã‚’ã—ãŸè²¯é‡‘ç®±ã€ã®æ„ï¼‰ã¯Firefoxã®æ‹¡å¼µã§ã€Javaã§æ›¸ã‹ã‚Œã¦ã„ã‚‹ã€‚é–‹ç™ºã—ãŸã®ã¯ã€MITã®SIMILEãƒ—ãƒã‚¸ã‚§ã‚¯ãƒˆâ€•â€•ã‚»ãƒžãƒ³ãƒ†ã‚£ãƒƒã‚¯ãƒ»ã‚¦ã‚§ãƒ–ã®ã‚¢ãƒ—ãƒªã‚±ãƒ¼ã‚·ãƒ§ãƒ³ã¨ãƒ„ãƒ¼ãƒ«ã‚’ãƒ†ãƒ¼ãƒžã¨ã™ã‚‹ã‚°ãƒ«ãƒ¼ãƒ—â€•â€•ã ã€‚Firefoxã«Piggy Bankã‚’ã‚¤ãƒ³ã‚¹ãƒˆãƒ¼ãƒ«ã—ã¦ã‚‚ã€Webã®é–²è¦§æ–¹æ³•ã¯å¾“æ¥ã©ãŠã‚Šã§å¤‰ã‚ã‚Šã¯ãªã„ã€‚ã—ã‹ã—ã€Piggy Bankã¯ãƒãƒƒã‚¯ã‚°ãƒ©ã‚¦ãƒ³ãƒ‰ã§å‹•ä½œã—ã¦ãŠã‚Šã€RDFãƒªãƒ³ã‚¯ã‚’æŒã¤ãƒšãƒ¼ã‚¸ã‚’é–‹ãã¨å°ã•ãªã€Œãƒ‡ãƒ¼ã‚¿ç¡¬è²¨ã€ï¼ˆè±šã®è²¯é‡‘ç®±ã«è²¯ã‚ã‚‹ç¡¬è²¨ã®ã¤ã‚‚ã‚Šï¼‰ã‚¢ã‚¤ã‚³ãƒ³ã‚’Firefoxã®ã‚¹ãƒ†ãƒ¼ã‚¿ã‚¹ãƒ»ãƒãƒ¼ã«è¡¨ç¤ºã™ã‚‹ã€‚ã“ã‚Œã‚’ã‚¯ãƒªãƒƒã‚¯ã™ã‚‹ã¨ã€Piggy B
ma_ko 2006/11/06
Piggy Bankã®ç°¡å˜ãªèª¬æ˜Ž

RDF
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