にじ‐こうぞう〔‐コウザウ〕【二次構造】
二次構造
(2次構造 から転送)
出典: フリー百科事典『ウィキペディア(Wikipedia)』 (2022/12/22 08:53 UTC 版)
二次構造(にじこうぞう、英: Secondary structure)は、タンパク質や核酸といった生体高分子の主鎖の部分的な立体構造のことである。本項ではタンパク質の二次構造を扱う。
- ^ Linderstrøm-Lang KU (1952). Lane Medical Lectures: Proteins and Enzymes. Stanford University Press. pp. 115. ASIN B0007J31SC
- ^ “Kaj Ulrik Linderstrøm-Lang (1896–1959)”. Protein Sci. 6 (5): 1092–100. (1997). doi:10.1002/pro.5560060516. PMC 2143695. PMID 9144781 . "He had already introduced the concepts of the primary, secondary, and tertiary structure of proteins in the third Lane Lecture (Linderstram-Lang, 1952)"
- ^ Steven Bottomley (2004年). “Interactive Protein Structure Tutorial”. 2011年1月9日閲覧。
- ^ “Secondary structure and rigidity in model proteins”. Soft Matter 9 (40): 9548–56. (October 2013). doi:10.1039/C3SM50807B. PMID 26029761.
- ^ “Rigidity, secondary structure, and the universality of the boson peak in proteins”. Biophysical Journal 106 (12): 2667–74. (June 2014). doi:10.1016/j.bpj.2014.05.009. PMC 4070067. PMID 24940784 .
- ^ “Coherent neutron scattering and collective dynamics in the protein, GFP”. Biophys. J. 105 (9): 2182–87. (2013). doi:10.1016/j.bpj.2013.09.029. PMC 3824694. PMID 24209864 .
- ^ “Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features”. Biopolymers 22 (12): 2577–637. (Dec 1983). doi:10.1002/bip.360221211. PMID 6667333.
- ^ “Identification of structural motifs from protein coordinate data: secondary structure and first-level supersecondary structure”. Proteins 3 (2): 71–84. (1988). doi:10.1002/prot.340030202. PMID 3399495.
- ^ “Knowledge-based protein secondary structure assignment”. Proteins 23 (4): 566–79. (Dec 1995). doi:10.1002/prot.340230412. PMID 8749853 .
- ^ Calligari, Paolo A.; Kneller, Gerald R. (2012-12-01). “ScrewFit: combining localization and description of protein secondary structure” (英語). Acta Crystallographica Section D 68 (12): 1690–1693. doi:10.1107/s0907444912039029. ISSN 0907-4449 .
- ^ Arun Konagurthu. “SST: Protein Secondary structural assignment using Minimum Message Length inference”. Laboratory of Computational Biology, Monash University. 2018年1月4日閲覧。
- ^ “Minimum message length inference of secondary structure from protein coordinate data”. Bioinformatics 28 (12): i97–i105. (Jun 2012). doi:10.1093/bioinformatics/bts223. PMC 3371855. PMID 22689785 .
- ^ “Spectroscopic methods for analysis of protein secondary structure”. Anal. Biochem. 277 (2): 167–76. (2000). doi:10.1006/abio.1999.4320. PMID 10625503.
- ^ “Rapid protein fold determination using unassigned NMR data”. Proc. Natl. Acad. Sci. U.S.A. 100 (26): 15404–09. (2003). doi:10.1073/pnas.2434121100. PMC 307580. PMID 14668443 .
- ^ “Prediction of protein conformation”. Biochemistry 13 (2): 222–45. (Jan 1974). doi:10.1021/bi00699a002. PMID 4358940.
- ^ “Empirical predictions of protein conformation”. Annu. Rev. Biochem. 47: 251–76. (1978). doi:10.1146/annurev.bi.47.070178.001343. PMID 354496.
- ^ “Prediction of the secondary structure of proteins from their amino acid sequence”. Adv. Enzymol. Relat. Areas Mol. Biol. 47: 45–148. (1978). doi:10.1002/9780470122921.ch2. PMID 364941.
- ^ a b “Integrating protein secondary structure prediction and multiple sequence alignment”. Current Protein & Peptide Science 5 (4): 249–66. (Aug 2004). doi:10.2174/1389203043379675. PMID 15320732.
- ^ “Protein secondary structure prediction”. Methods Mol. Biol. 609: 327–48. (2010). doi:10.1007/978-1-60327-241-4_19. PMID 20221928.
- ^ “SAM-T08, HMM-based protein structure prediction”. Nucleic Acids Res. 37 (Web Server issue): W492–97. (2009). doi:10.1093/nar/gkp403. PMC 2703928. PMID 19483096 .
- ^ “Porter: a new, accurate server for protein secondary structure prediction”. Bioinformatics 21 (8): 1719–20. (2005). doi:10.1093/bioinformatics/bti203. PMID 15585524.
- ^ “PredictProtein—an open resource for online prediction of protein structural and functional features”. Nucleic Acids Res. 42 (Web Server issue): W337–43. (2014). doi:10.1093/nar/gku366. PMC 4086098. PMID 24799431 .
- ^ “Combining prediction of secondary structure and solvent accessibility in proteins”. Proteins 59 (3): 467–75. (2005). doi:10.1002/prot.20441. PMID 15768403.
- ^ “The effect of long-range interactions on the secondary structure formation of proteins”. Protein Science 14 (8): 1955–963. (Aug 2005). doi:10.1110/ps.051479505. PMC 2279307. PMID 15987894 .
- ^ “Structural classification of thioredoxin-like fold proteins”. Proteins 58 (2): 376–88. (2005). doi:10.1002/prot.20329. PMID 15558583 . "Since the fold definition should include only the core secondary structural elements that are present in the majority of homologs, we define the thioredoxin-like fold as a two-layer / sandwich with the βαββαβ secondary-structure pattern."
- ^ “Alpha helices are more robust to mutations than beta strands”. PLoS Computational Biology 12 (12): 1–16. (2016). doi:10.1371/journal.pcbi.1005242. PMID 27935949.
- ^ “Global analysis of protein folding using massively parallel design, synthesis, and testing”. Science 357 (6347): 168–175. (2017). doi:10.1126/science.aan0693. PMID 28706065.
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