Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources - Nature Protocols
Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.
Welcome - Cytoscape Wiki
Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. Tips_on_using_this_wiki See all pages in this wiki Note: To edit wiki pages, sign up for an account, then add yourself to the editor list. Using Cytoscape Cytoscape_User_Manual: Development draft Example
DAVID Functional Annotation Bioinformatics Microarray Analysis
The Database for Annotation, Visualization and Integrated Discovery (DAVID ) v6.8 comprises a full Knowledgebase update to the sixth version of our original web-accessible programs. DAVIDÂ now provides a comprehensive set of functional annotation tools for investigators to understand biological meaning behind large list of genes. For any given gene list, DAVID tools are able to: Identify enriched b
FANTOM 4 | Home Page
Welcome to FANTOM Functional Annotation of the Mammalian Genome FANTOMã¯ã€ç†åŒ–å¦ç ”究所 ã‚ªãƒŸãƒƒã‚¯ã‚¹åŸºç›¤ç ”ç©¶é ˜åŸŸãŒä¸»å‚¬ã™ã‚‹å›½éš›ç ”究コンソーシアムã§ã™ã€‚ã“ã‚Œã¾ã§ã«ã€103,000ã®ãƒžã‚¦ã‚¹å®Œå…¨é•·cDNAクãƒãƒ¼ãƒ³ã®åŽé›†ãŠã‚ˆã³ã‚¢ãƒŽãƒ†ãƒ¼ã‚·ãƒ§ãƒ³ï¼ˆæ©Ÿèƒ½æ³¨é‡ˆï¼‰ã‚’è¡Œã„ã€ä¸–ç•Œä¸ã®ç ”究機関ã¸é…布ã—ã¦ãã¾ã—ãŸã€‚FANTOMプãƒã‚¸ã‚§ã‚¯ãƒˆã®1,2,3回目ã«ãŠã„ã¦ã¯ã€ã»ä¹³é¡žç´°èƒžã«ãŠã„ã¦è»¢å†™ã•ã‚Œã¦ã„ã‚‹è¦ç´ ã®åŒå®šã«å–り組ã¿ã€éºä¼åã®ç·æ•°ã«é–¢ã™ã‚‹æ¦‚念を刷新ã™ã‚‹ã¨ã¨ã‚‚ã«ã€è»¢å†™ç”£ç‰©ã®åŠåˆ†ä»¥ä¸ŠãŒã‚¿ãƒ³ãƒ‘ク質をコードã—ãªã„ã“ã¨ã‚’ã¤ãã¨ã‚ã¾ã—ãŸã€‚FANTOM3プãƒã‚¸ã‚§ã‚¯ãƒˆã§ã¯ãã‚Œã«åŠ ãˆã€CAGE（Cap Analysis of Gene Expression）法ã®é–‹ç™ºã‚’è¡Œã„ã€ã‚²ãƒŽãƒ ワイドãªè»¢å†™é–‹å§‹ç‚¹ã®åŒå®šã‚’è¡Œã„ã¾ã—ãŸã€‚ãã®çµæžœã€ã“ã‚Œã¾ã§ã«è€ƒãˆã‚‰ã‚Œã¦ããŸã‚‚ã®ã‚ˆã‚Šã‚‚é¥ã‹ã«å¤š
Open-bio.jp
オープンãƒã‚¤ã‚ªç ”究会 オープンソースã®ãƒã‚¤ã‚ªã‚¤ãƒ³ãƒ•ã‚©ãƒžãƒ†ã‚£ã‚¯ã‚¹ãƒ—ãƒã‚¸ã‚§ã‚¯ãƒˆã‚’推進 英å Japan Open Bioinformatics Research Group 通称 Open Bio Japan 略称 (O|B|J) See wiki for details. 目的 海外ã§ã¯ã€BioPerl, Biopython, BioJava, EMBOSS ãªã©ãƒã‚¤ã‚ªã‚¤ãƒ³ãƒ•ã‚©ãƒžãƒ†ã‚£ã‚¯ã‚¹ç”¨ã®ã‚½ãƒ•ãƒˆã‚¦ã‚§ã‚¢é–‹ç™ºãƒ—ãƒã‚¸ã‚§ã‚¯ãƒˆã‚’円滑ã«æŽ¨é€²ã™ã‚‹ãŸã‚ã« Open Bio Foundation (OBF) ãŒé‡è¦ãªå½¹å‰²ã‚’æžœãŸã—ã¦ãŠã‚Šã€ã“れらã®ã‚½ãƒ•ãƒˆã‚¦ã‚§ã‚¢ã‚’å«ã‚€æ•°å¤šãã®ã‚ªãƒ¼ãƒ—ンソースソフトウェアãŒã‚¢ã‚«ãƒ‡ãƒŸãƒƒã‚¯ï¼ã‚³ãƒžãƒ¼ã‚·ãƒ£ãƒ«ã‚’å•ã‚ãšåºƒã使ã‚ã‚Œã¦ã„ã¾ã™ã€‚ã—ã‹ã—ã€å›½å†…ã§ã¯ã“れらã®ãƒ—ãƒã‚¸ã‚§ã‚¯ãƒˆã«é–¢ã‚ã£ã¦ã„る開発者ãŒå°‘ãªã„ã“ã¨ã‚„ã€æ—¥æœ¬èªžãƒ‰ã‚ュメントã®ä¸è¶³ã‹ã‚‰ã‹ã€ã¾ã å分ã«ã¯æ´»ç”¨ã•ã‚Œã¦ã„ã¾ã›ã‚“ã—ã€å›½éš›çš„ã«ã‚‚貢献ãŒè¶³ã‚Šãª
講義資料
2009å¹´GCOE特別セミナー (ã‚ャリアパス支æ´ãƒ†ã‚¯ãƒ‹ã‚«ãƒ«ã‚»ãƒŸãƒŠãƒ¼) ～転写制御ã®ãƒã‚¤ã‚ªã‚¤ãƒ³ãƒ•ã‚©ãƒžãƒ†ã‚£ã‚¯ã‚¹å…¥é–€ï½ž 2009å¹´12月18æ—¥ã€æ±äº¬å¤§å¦åŒ»ç§‘å¦ç ”究所ヒトゲノム解æžã‚»ãƒ³ã‚¿ãƒ¼ レジュメ PDF版 2009å¹´GCOEテクニカルトレーニングセミナー ～Perlを用ã„ãŸã‚²ãƒŽãƒ ・é…列解æžï½ž 2009å¹´10月5日～10月9æ—¥ã€æ±äº¬å¤§å¦æ©Ÿèƒ½è§£æžã‚¤ãƒ³ãƒ»ã‚·ãƒªã‚³åˆ†é‡Ž レジュメ PDF版 ãã®ä»–ã®è³‡æ–™ sample.txt sample_list.txt ãƒ¡ãƒ‡ã‚£ã‚«ãƒ«ã‚²ãƒŽãƒ ã‚µã‚¤ã‚¨ãƒ³ã‚¹ç ”ç©¶å®¤å®Ÿç¿’ ～統計ソフトRを用ã„ãŸãƒžã‚¤ã‚¯ãƒã‚¢ãƒ¬ã‚¤è§£æžï½ž 2008å¹´9月9日～9月12æ—¥ã€æ±äº¬å¤§å¦æ©Ÿèƒ½è§£æžã‚¤ãƒ³ãƒ»ã‚·ãƒªã‚³åˆ†é‡Ž レジュメ HTML版 PDF版 ãã®ä»–ã®è³‡æ–™ startxwin startxwin.bat ゲノムリテラシー講座 ï½žè»¢å†™åˆ¶å¾¡é ˜åŸŸã®é…列解æžå…¥é–€ï½ž 2008å¹´9月3æ—¥ã€JST-BIRD PDF版 é–“é•ã„ã‚„
GCOE_lec20091218.ppt
誰ã«ã§ã‚‚ã§ãã‚‹ 発ç¾ãƒ‡ãƒ¼ã‚¿è§£æž æ±äº¬å¤§å¦åŒ»ç§‘å¦ç ”究所 ヒトゲノム解æžã‚»ãƒ³ã‚¿ãƒ¼ 機能解æžã‚¤ãƒ³ãƒ»ã‚·ãƒªã‚³åˆ†é‡Ž ç”°ä¸â€ƒç¾©ç« 転写制御ã®ãƒã‚¤ã‚ªã‚¤ãƒ³ãƒ•ã‚©ãƒžãƒ†ã‚£ã‚¯ã‚¹å…¥é–€ 2 トランスクリプトーム解æžï¼ˆï¼‘） ï®â€¯ éºä¼å発ç¾é‡ã®æ¸¬å®š （次世代シーケンサetc (鈴木先生)） ï®â€¯ 発ç¾é‡å¤‰åŒ–ãŒæœ‰æ„ãªéºä¼åã®åŒå®š （田ä¸ï¼‰ ï®â€¯ アノテーション解æžã€ãƒ‘スウェイ解æž(ç”°ä¸) ï®â€¯ 発ç¾åˆ¶å¾¡å› åã®è§£æžï¼ˆå±±ä¸‹å…ˆç”Ÿï¼‰ 転写制御ã®ãƒã‚¤ã‚ªã‚¤ãƒ³ãƒ•ã‚©ãƒžãƒ†ã‚£ã‚¯ã‚¹å…¥é–€ 3 トランスクリプトーム解æžï¼ˆï¼’） ï®â€¯ 発ç¾è§£æžã®ä¾‹  １．薬物処ç†ç¾¤vséžå‡¦ç†ç¾¤  ２．感染細胞vséžæ„ŸæŸ“細胞  ３．異ãªã‚‹ç´°èƒžç¨®  ４．細胞周期毎ã®ç™ºç¾é‡ã®é•ã„ ï®â€¯ 解æžæ–¹æ³•  １．マイクãƒã‚¢ãƒ¬ã‚¤(Affimetrix, Stanford etc)  ２．次世代シーケンサ(Solexa, SOLiD, 454 etc) 転写制御ã®ãƒ
Tablet : Information & Computational Sciences
Tablet Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments. Visit the download page to get the latest version of Tablet (1.21.02.08; 8th February 2021). Please cite: Milne I, Stephen G, Bayer M, Cock PJA, Pritchard L, Cardle L, Shaw PD and Marshall D. 2013. Using Tablet for visual exploration of second-generation sequencing data. Briefi
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome - Genome Biology
Software Open access Published: 04 March 2009 Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Ben Langmead1, Cole Trapnell1, Mihai Pop1 & …Steven L Salzberg1 Show authors Genome Biology volume 10, Article number: R25 (2009) Cite this article Bowtie is an ultrafast, memory-efficient alignment program for aligning short DNA sequence reads to large genomes. For the
NGS Alignment Programs
Software Currently, this page only includes software I am familiar with. Most of them aim for aligning next-generation sequencing (NGS) data and were developed since 2007. I may extend the list when I have time. Several notes: The programs are listed in the alphabet order in each category. Features shown in brackets are optional and may affect efficiency. The version number shown for each program
NGS Surfer's Wiki | HomePage
HomePage TikiWikiã®ãƒãƒ¼ã‚¸ãƒ§ãƒ³ã‚¢ãƒƒãƒ— ã€2012.2.29】 NGS Sufer's Wikiã§ä½¿ç”¨ã—ã¦ã„ã‚‹TikiWikiã®ãƒãƒ¼ã‚¸ãƒ§ãƒ³ã‚’v5.4ã‹ã‚‰v8.3ã«ã‚¢ãƒƒãƒ—ã—ã¾ã—ãŸã€‚ã“ã®ãƒãƒ¼ã‚¸ãƒ§ãƒ³ã‚¢ãƒƒãƒ—ã«ã‚ˆã‚Šã€ã‚»ã‚ュリティãŒã‚ˆã‚Šå¼·åŒ–ã•ã‚Œã‚¹ãƒ‘ムç‰ã®ä¸æ£æ›¸ãè¾¼ã¿ã‚’ã§ãã‚‹é™ã‚Šé®æ–ã™ã‚‹è¨å®šã«ã—ã¦ã„ã¾ã™ã€‚ サイト内検索 by googleカスタム検索 メインコンテンツ åˆã‚ã¦ã®æ–¹ã¸ シーケンサーã®ä¸€èˆ¬è«– 次世代シーケンサーã®æ¦‚è¦ DNAマイクãƒã‚¢ãƒ¬ã‚¤ã¨æ¬¡ä¸–代シーケンサーã®æ¯”較 シーケンサープラットフォーム(機種)ã®é•ã„ アプリケーションリスト アセンブル (de novoアセンブリ, トランスクリプトームアセンブリ, メタゲノム) ãƒˆãƒ©ãƒ³ã‚¹ã‚¯ãƒªãƒ—ãƒˆãƒ¼ãƒ è§£æž (発ç¾è§£æžã€ã‚¹ãƒ—ライシングãƒãƒªã‚¢ãƒ³ãƒˆè§£æžã€ncRNA・smallRNA解æž) ãƒªã‚·ãƒ¼ã‚±ãƒ³ã‚·ãƒ³ã‚°è§£æž (WGS, exome, CNV,
(Rã§)塩基é…列解æž
(Rã§)塩基é…åˆ—è§£æž (last modified 2024/12/04, since 2010) ã“ã®ãƒšãƒ¼ã‚¸ã¯ã€RStudio (Rå«ã‚€)ã§ç”Ÿå‘½ç§‘å¦ç³»ã®ãƒ‡ãƒ¼ã‚¿è§£æžã‚’è¡Œã†ãŸã‚ã®ãƒ†ãƒ³ãƒ—レート集ã§ã™ã€‚ã“ã®ãƒšãƒ¼ã‚¸ã«ç‰¹åŒ–ã—ãŸãƒãƒ¥ãƒ¼ãƒˆãƒªã‚¢ãƒ«ï¼ˆã‚¤ãƒ³ã‚¹ãƒˆãƒ¼ãƒ« | ã«ã¤ã„ã¦ã¨åŸºæœ¬çš„ãªåˆ©ç”¨æ³•ï¼‰ã‚’一通り実践ã—ãŸä¸Šã§ã”利用ãã ã•ã„。より一般的ãªãƒãƒ¥ãƒ¼ãƒˆãƒªã‚¢ãƒ«ã¯ã€æ•™ç§‘書ã®ä»˜éŒ²ãƒšãƒ¼ã‚¸(â†èªè¾¼ã«æ™‚é–“ãŒã‹ã‹ã‚‰ãªããªã‚Šã¾ã—ãŸ)ã«ã‚ã‚‹R1.010ã¨R1.020ã§æä¾›ã—ã¦ã„ã¾ã™(2023/04/01)。 アグリãƒã‚¤ã‚ªã‚¤ãƒ³ãƒ•ã‚©ãƒžãƒ†ã‚£ã‚¯ã‚¹ã€@Agribio_utokyoã€ã‚¢ã‚°ãƒªãƒã‚¤ã‚ªã®æ•™ç§‘書ã€(Rã§)塩基é…列解æžã®ã‚µãƒ–ページ What's new? (éŽåŽ»ã®ãŠçŸ¥ã‚‰ã›ã¯ã“ã¡ã‚‰) è«–æ–‡ã«å‡ºã‚‹éºä¼å　デルジーン300（åŠè¾²ç§€é›… 編）ãŒ2024å¹´10月ã«å‡ºç‰ˆã•ã‚Œã¦ã„ã¾ã™ã€‚1éºä¼å1ページã§ç°¡æ½”ã«æ›¸ã‹ã‚Œã¦ã„ã‚‹ã®ã§ã€ç‰¹ã«ç”Ÿç‰©ã®çŸ¥è˜ãŒãã‚Œã»ã©
リリースã€éšœå®³æƒ…å ±ãªã©ã®ã‚µãƒ¼ãƒ“スã®ãŠçŸ¥ã‚‰ã›
最新ã®äººæ°—エントリーã®é…ä¿¡
j次ã®ãƒ–ックマーク
kå‰ã®ãƒ–ックマーク
lã‚ã¨ã§èªã‚€
eコメント一覧を開ã
oページを開ã
Gene Ontology Enrichment Analysis Software Toolkit (GOEAST) -- Homepage
g86 has gone.
g86 has gone.
g86 has gone.
g86 has gone.
ZEBRAFISH-BASED QUANTITATIVE AND SYSTEMS PHARMACOLOGY
Volume 39 Issue suppl_1 | Nucleic Acids Research | Oxford Academic
DBCLS SRA
{{#tags}}- {{label}}
{{/tags}}