Data for Imaging Flow Cytometry

R script for summarising paramater / channel intensity from flow or mass cytometry data

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

The equivalent circuit model for a parallel electrode impedance cytometer is analyzed together with Maxwell's theory of homogenization of mixtures. It deals with both a modeling single and double shell.

Comparison of Dimensionality Reduction Techniques in CytoExploreR

Autogating for gate 1 and gate 2 with U-Net.

Counts index files and folders produced by the BD Influx

Rename your BD Influx workspaces to the same name found in the 'Name' tag of the workspace

Work done during rotation with Coleen McNamara & Stefan Bekiranov in UVA BIMS PhD program

Transcriptic package for flow cytometry to demonstrate continuous integration for experiments

Extracts the sort statistics from the XDP server

CyFlowRec is software for collecting FCS (Flow Cytometry Standard) files received via the serial port (RS232 serial interface) from a Partec flow cytometer sent via the TRANSFER function.

An R package to apply Batch Normalization to cytometry

Flow Cytometry analysis in R | Proteomics

A meta-package to test pipelines of image processing tools and cytometry-style calibration.

HDStIM: High Dimensional Stimulation Immune Mapping

Image Processing tools for Imaging Flow Cytometry

An R Interactive Shiny Application for the Analysis of Imaging and Conventional Flow Cytometry

HIPC Cytometry

Single-cell dimensionality reduction evaluation and benchmarking toolkit