Data for Imaging Flow Cytometry

R script for summarising paramater / channel intensity from flow or mass cytometry data

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

An R package to apply Batch Normalization to cytometry

HDStIM: High Dimensional Stimulation Immune Mapping

An R Interactive Shiny Application for the Analysis of Imaging and Conventional Flow Cytometry

HIPC Cytometry

A R package to apply Batch Normalization to cytometry

SuperCell for Cytometry data

Easily install and load packages from the tidyomcis ecosystem

Plots log histograms of FCS files like CyTOF's PlotViewer program

R Script for reading CyTOF or flow cytometry data (FCS) and generating plots like Cytobank

Temporal clustering and tracking algorithm which fuses on FlowSOM and ChronoClust, specifically designed for analysing temporal cytometry data

online version please visit

R scripts to help with your flow cytometry analysis. Batch index export and overlays

Tools for Imaging Flow Cytometry

Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation

PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.

Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments

An R package for analyzing high-dimensional cytometry data using the tidyverse.