Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
Tools for Imaging Flow Cytometry
Flow Cytometry analysis in R | Proteomics
Image Processing tools for Imaging Flow Cytometry
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
Temporal clustering and tracking algorithm which fuses on FlowSOM and ChronoClust, specifically designed for analysing temporal cytometry data
PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.
Single-cell dimensionality reduction evaluation and benchmarking toolkit
Single-cell dimensionality reduction toolkit
An R package for analyzing high-dimensional cytometry data using the tidyverse.
Official implementation of GateNet
an interactive explorer for flow cytometry data
A Python library for reading and writing Flow Cytometry Standard (FCS) files
Repository for MODS subphenotype preprint, data, and code.
CyFlowRec is software for collecting FCS (Flow Cytometry Standard) files received via the serial port (RS232 serial interface) from a Partec flow cytometer sent via the TRANSFER function.
Image Mass Cytometry analysis pipeline
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
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