[B! bioinformatics] Hashã®ãƒ–ãƒƒã‚¯ãƒžãƒ¼ã‚¯

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bioinformaticsã«é–¢ã™ã‚‹Hashã®ãƒ–ãƒƒã‚¯ãƒžãƒ¼ã‚¯ (328)

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ã‚³ãƒ³ãƒ”ãƒ¥ãƒ¼ã‚¿ã‚·ãƒŸãƒ¥ãƒ¬ãƒ¼ã‚·ãƒ§ãƒ³ã§æ–°åž‹ã‚³ãƒãƒŠã‚¦ã‚¤ãƒ«ã‚¹ã®æ²»ç™‚æ³•ã®é–‹ç™ºã«å½¹ç«‹ã¦ã‚‹...... Maksim Tkachenko-iStock ï¼œåˆ†æ•£ã‚³ãƒ³ãƒ”ãƒ¥ãƒ¼ãƒ†ã‚£ãƒ³ã‚°ãƒ—ãƒã‚¸ã‚§ã‚¯ãƒˆFolding@home ã¯ã€æ–°åž‹ã‚³ãƒãƒŠã‚¦ã‚¤ãƒ«ã‚¹ã®è§£æžã«ç€æ‰‹ã—ã€ä½™å‰°ã¨ãªã£ã¦ã„ã‚‹CPUã‚„GPUã®å‡¦ç†èƒ½åŠ›ã®æä¾›ã‚’ä¸–ç•Œä¸ã«åºƒãå‘¼ã³ã‹ã‘ã¦ã„ã‚‹......ï¼ž ç±³ã‚¹ã‚¿ãƒ³ãƒ•ã‚©ãƒ¼ãƒ‰å¤§å¦ã‚’ä¸å¿ƒã¨ã™ã‚‹åˆ†æ•£ã‚³ãƒ³ãƒ”ãƒ¥ãƒ¼ãƒ†ã‚£ãƒ³ã‚°ãƒ—ãƒã‚¸ã‚§ã‚¯ãƒˆFolding@homeï¼ˆãƒ•ã‚©ãƒ¼ãƒ«ãƒ‡ã‚£ãƒ³ã‚°ãƒ»ã‚¢ãƒƒãƒˆãƒ»ãƒ›ãƒ¼ãƒ ï¼‰ã¯ã€2020å¹´3æœˆã€æ–°åž‹ã‚³ãƒãƒŠã‚¦ã‚¤ãƒ«ã‚¹ï¼ˆSARS-CoV-2ï¼‰ã®è§£æžã«ç€æ‰‹ã—ã€ä½™å‰°ã¨ãªã£ã¦ã„ã‚‹CPUã‚„GPUã®å‡¦ç†èƒ½åŠ›ã®æä¾›ã‚’ä¸–ç•Œä¸ã«åºƒãå‘¼ã³ã‹ã‘ã¦ã„ã‚‹ã€‚ ä¸–ç•Œä¸ã®ã‚³ãƒ³ãƒ”ãƒ¥ãƒ¼ã‚¿ã®å‡¦ç†èƒ½åŠ›ã‚’çµé›†ã—ã¦ã€æ§˜ã€…ãªç–¾ç—…ã®æ²»ç™‚ã«å¯„ä¸Ž Folding@homeã¯ã€2000å¹´10æœˆã®å‰µè¨ä»¥æ¥ã€åˆ†æ•£ã‚³ãƒ³ãƒ”ãƒ¥ãƒ¼ãƒ†ã‚£ãƒ³ã‚°æŠ€è¡“ã«ã‚ˆã‚Šã€ã‚ªãƒ³ãƒ©ã‚¤ãƒ³ã§æŽ¥ç¶šã•ã‚ŒãŸä¸–ç•Œä¸ã®ã‚³ãƒ³ãƒ”ãƒ¥
Hash 2020/04/06
æ‡ã‹ã—ã„åå‰ã‚’è¦‹ãŸ

bioinformatics

protein
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ãªãœãƒã‚¤ã‚ªã‚¤ãƒ³ãƒ•ã‚©ãƒžãƒ†ã‚£ã‚¯ã‚¹ã®è§£æžã¯ã‚¿ãƒ€ã§ã¯ãªã„ã®ã‹ - ã“ã‚“ãªæ™‚é–“ã§ã™ãŒãƒ‘ã‚¹ã‚¿ã‚’èŒ¹ã§ã¾ã™
ã“ã®è¨˜äº‹ã¯ Why Bioinformatics Analysis Is Not Free - MassGenomics http://massgenomics.org/2015/10/ngs-analysis-not-free.html ã®æ—¥æœ¬èªžè¨³ã§ã™ã€‚ã¨ã“ã‚ã©ã“ã‚æ„è¨³ã—ã¦ã„ã¾ã™ãŒã€ä¸»æ—¨ã¯å¤‰ãˆã¦ã„ã¾ã›ã‚“ã€‚ This article is translated fromÂ â€œWhy Bioinformatics Analysis Is Not Free - MassGenomicsâ€ http://massgenomics.org/2015/10/ngs-analysis-not-free.html .Â I would like to thankÂ Dan for his great and important blog post! == NGSã®ç™ºå±•ã¯éºä¼å¦ã®åˆ†é‡Žã«ã¨ã£ã¦å¤§ããªåŠ©ã‘ã«ãªã£ã¦ã„
Hash 2018/04/17
@iNut

bioinformatics
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NGS data analysis - BITS wiki
Hash 2018/02/23
NGS

bioinformatics

wiki

tutorial
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Genomic Analysis with Hail on Amazon EMR and Amazon Athena | Amazon Web Services
AWS Big Data Blog Genomic Analysis with Hail on Amazon EMR and Amazon Athena UPDATE: Hail version 0.2 (stable) represents over a year of great work by the community. Â It includes new capabilities, numerous fixes and improved performance. Weâ€™ve updated the CloudFormation template in this post to allow you to launch an Amazon EMR cluster with Hail v0.2. Genomics analysis has taken off in recent year
Hash 2017/12/12
AWS

EMR

Athena

gene

bioinformatics

ã‚ã¨ã§
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ã‚²ãƒŽãƒ ã‚¹ã‚¿ãƒ¼ãƒˆã‚¢ãƒƒãƒ—ã®AWAKENSã€ã‚·ãƒ¼ãƒ‰è³‡é‡‘ã‚’èª¿é”â€”â€”500 Startups Japanã‚„ã‚¨ãƒ ã‚¹ãƒªãƒ¼ã€ãƒ©ã‚¤ãƒ•ã‚µã‚¤ã‚¨ãƒ³ã‚¹ç³»è‘—åã‚¨ãƒ³ã‚¸ã‚§ãƒ«æŠ•è³‡å®¶ã‚‰ãŒå‚åŠ - BRIDGEï¼ˆãƒ–ãƒªãƒƒã‚¸ï¼‰
ã‚²ãƒŽãƒ ã‚¹ã‚¿ãƒ¼ãƒˆã‚¢ãƒƒãƒ—ã®AWAKENSã€ã‚·ãƒ¼ãƒ‰è³‡é‡‘ã‚’èª¿é”â€”â€”500 Startups Japanã‚„ã‚¨ãƒ ã‚¹ãƒªãƒ¼ã€ãƒ©ã‚¤ãƒ•ã‚µã‚¤ã‚¨ãƒ³ã‚¹ç³»è‘—åã‚¨ãƒ³ã‚¸ã‚§ãƒ«æŠ•è³‡å®¶ã‚‰ãŒå‚åŠ å·¦ã‹ã‚‰ï¼šCTO æ²¼å€‰å¥ä»‹æ°ã€CEO é«˜é‡Žèª å¤§æ°ã€COO æ¾ç”°ç¥å¤ªæ° ã‚·ãƒªã‚³ãƒ³ãƒãƒ¬ãƒ¼ã‚’æ‹ ç‚¹ã«ã€ãƒ•ãƒ«ã‚²ãƒŽãƒ ãƒ‡ãƒ¼ã‚¿ã‚’æ´»ç”¨ã—ãŸã‚µãƒ¼ãƒ“ã‚¹ãŠã‚ˆã³ãƒªã‚µãƒ¼ãƒãƒ—ãƒ©ãƒƒãƒˆãƒ•ã‚©ãƒ¼ãƒ ã®æ§‹ç¯‰ã‚’ç›®æŒ‡ã™ã‚²ãƒŽãƒ ã‚¹ã‚¿ãƒ¼ãƒˆã‚¢ãƒƒãƒ—ã® AWAKENSï¼ˆã‚¢ã‚¦ã‚§ã‚¤ã‚¯ãƒ³ï¼‰ã¯22æ—¥ã€ã‚·ãƒ¼ãƒ‰ãƒ©ã‚¦ãƒ³ãƒ‰ã§è³‡é‡‘ã‚’èª¿é”ã—ãŸã¨ç™ºè¡¨ã—ãŸã€‚ã“ã®ãƒ©ã‚¦ãƒ³ãƒ‰ã®ãƒªãƒ¼ãƒ‰ã‚¤ãƒ³ãƒ™ã‚¹ã‚¿ãƒ¼ã¯ 500 Startups Japan ã§ã€ã‚¨ãƒ ã‚¹ãƒªãƒ¼ï¼ˆæ±è¨¼ï¼š2413ï¼‰ã¨æ—¥æœ¬åŒ»ç™‚æ©Ÿå™¨é–‹ç™ºæ©Ÿæ§‹ã®ã»ã‹ã€éŽŒç”°å¯Œä¹…æ°ï¼ˆTomyKï¼‰ã€è¥¿é‡Žæ’äº”éƒŽæ°ï¼ˆãƒžãƒ¼ã‚½ï¼‰ã€åŒ—é‡Žå®æ˜Žæ°ï¼ˆã‚½ãƒ‹ãƒ¼ã‚³ãƒ³ãƒ”ãƒ¥ãƒ¼ã‚¿ã‚µã‚¤ã‚¨ãƒ³ã‚¹ç ”ç©¶æ‰€ä»£è¡¨å–ç· å½¹ç¤¾é•·å…¼æ‰€é•·ï¼‰ã‚’å«ã‚€è¤‡æ•°ã®å€‹äººæŠ•è³‡å®¶ãŒå‚åŠ ã—ãŸã€‚èª¿é”é‡‘é¡ã¯ä¸æ˜Žã€‚AWAKENS ã§ã¯èª¿é”ã—ãŸè³‡é‡‘ã‚’æ´»ç”¨ã—ã€ã‚²ãƒŽãƒ çµ±åˆåž‹ã‚µãƒ¼ãƒ“ã‚¹é–‹
Hash 2017/10/29
startup

bioinformatics

company
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Breaking the â€œcurse of dimensionalityâ€ in Genomics using â€œwideâ€ Random Forests
Unified governance for all data, analytics and AI assets
Hash 2017/08/01
VariantSpark RF, ã¨ãª

bioinformatics

spark
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Genome Biz Meetup 2017ï½œITå‹‰å¼·ä¼šãƒ»ã‚¤ãƒ™ãƒ³ãƒˆãªã‚‰TECH PLAYï¼»ãƒ†ãƒƒã‚¯ãƒ—ãƒ¬ã‚¤ï¼½
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Hash 2017/06/07
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event

business

bioinformatics
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Tissue-based map of the human proteome | Science
Hash 2017/06/05
Uhlen, 2015 => æˆæžœç‰©ãŒ www.proteinatlas.org

paper

protein

bioinformatics
ãƒªãƒ³ã‚¯
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Hash 2017/06/05
protein

database

japan

bioinformatics
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The Human Protein Atlas
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Hash 2017/06/05
protein

database

bioinformatics

bio
ãƒªãƒ³ã‚¯
ProteomicsDB
Hash 2017/06/05
protein

database

bioinformatics

bio
ãƒªãƒ³ã‚¯
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Hash 2017/05/13
ã¾ã‚ãã®ãªã‚“ã

bioinformatics
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Evolutionary-guided de novo structure prediction of self-associated transmembrane helical proteins with near-atomic accuracy - Nature Communications
Hash 2017/04/26
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paper

protein

bioinformatics
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Interactive Analysis of Genomic Datasets Using Amazon Athena | Amazon Web Services
AWS Big Data Blog Interactive Analysis of Genomic Datasets Using Amazon Athena Aaron Friedman is a Healthcare and Life Sciences Solutions Architect with Amazon Web Services The genomics industry is in the midst of a data explosion. Due to the rapid drop in the cost to sequence genomes, genomics is now central to many medical advances. When your genome is sequenced and analyzed, raw sequencing file
Hash 2016/12/08
1000 Genomes Project ã®ãƒ‡ãƒ¼ã‚¿ã‚’ Spark ã§ãƒžã‚¨ã‚·ãƒ§ãƒªã—ã¦ Athena ã§å©ãã‚„ã¤. ã‚³ãƒ¼ãƒ‰ => https://github.com/awslabs/aws-big-data-blog/tree/master/aws-blog-athena-genomics

AWS

spark

bioinformatics

atheism
ãƒªãƒ³ã‚¯
BioSharing for the NIH BD2K community
Hash 2016/11/30
bioinformatics

presentation

communication
ãƒªãƒ³ã‚¯
Halyard | Home
Hash 2016/11/30
Halyard: TriplestoreÂ with support forÂ Named Graphs, designed for integration of extremely largeÂ Semantic Data Models, and for storage andÂ SPARQL 1.1Â querying of the wholeÂ Linked DataÂ universe snapshots. Based on HBase

HBase

bioinformatics

RDF
ãƒªãƒ³ã‚¯
Parallelizing Genome Variant Analysis
Hash 2016/11/17
gene

tech

bioinformatics

ã‚ã¨ã§
ãƒªãƒ³ã‚¯
Genome Engineering Applications: Early Adopters of the Cloud | Amazon Web Services
Hash 2016/11/15
CRISPR ã‚¿ãƒ¼ã‚²ãƒƒãƒˆã‚µã‚¤ãƒˆæ¤œç´¢ã‚·ã‚¹ãƒ†ãƒ ã‚’ AWS ä¸Šã« API Gateway + Lambda + DynamoDB å‡ºä½œã£ãŸã¨ã‹è¨€ã†è©±

bio

AWS

bioinformatics

medical
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Leader in the field of biophysics and computational modeling has died
Directory Ted's CafÃ© Give Article Schulten, who led Beckmanâ€™s Theoretical and Computational Biophysics Group, was a leader in the field of biophysics, conducting seminal work in the area of dynamic computer simulations, illuminating biological processes and structures in ways that werenâ€™t possible before. Schultenâ€™s goal from his start as an original Beckman researcher was to use mathematics and p
Hash 2016/11/01
science

ã²ã¨

bioinformatics

physics
ãƒªãƒ³ã‚¯
CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data - BMC Bioinformatics
CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data Software Open access Published: 13 September 2016 CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data David A. duVerle1,5, Sohiya Yotsukura2, Seitaro Nomura3, Hiroyuki Aburatani3 & â€¦Koji Tsuda1,4,5Â Show autho
Hash 2016/09/14
bio

paper

ã‚ã¨ã§

bioinformatics

R
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