Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.

Transformer-based sequence correction method for genome assembly polishing

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

How compressible is a human genome sequence?

A Python tool to calculate penetrance tables for high-order epistasis models

A repository containing all the file projects that I have for the Bioinformatics 3 (COMP 4312b) course.

Program Structures and Algorithms GENETIC ALGORITHM

A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)

A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.

Repository for variant calling utilizing bioinformatics tools and databases