An interactive web tool for quality control of DNA sequencing data

A quality control tool for FASTQ files written in rust

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

A pipeline to investigate horizontal gene transfer from NGS data

FAstqc DAta PArser - A minimal parser to parse FastQC output data.

A simple fastp-MultiQC nextflow pipeline

Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.

Quality Control, Mapping and Reads Count for RNA-Seq Analysis

Whole Exome Sequencing end-to-end pipeline. Starting from whole exome fastq files: Data QC, Adapter Trimming, Reference Genome Alignment, SAM/BAM Validation, Data Recalibration and Variant Calling.

RNA-seq workflow for UALBANY CFG - Demux, QC, Vis, Align, preProcess, DGE Calls

Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …

sequana pipeline to perform parallel fastqc and summarize results with multiqc plot

血小板转录组fastq数据处理

Map and post-process your bams for SNP calling

This is a code tutorial for rna or dna sequence mapping by myself-RyanYip

Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.