Demonstrate problems with merging channels using a map as the key to merge by.

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

Proof of concept showing a different way to handle the NCBI settings.

RNA Sequencing pipeline on Cardiff University Hawk using NF-Core with example data.

Processing of RNA-Seq data with nf-core pipelines and machine learning

Advanced Training in Bioinformatics Workflows: Beginner - Intermediate level Bioinformaticians working with next-generation sequencing data in East-Africa.

Nextflow-powered Dragonflye Pipeline for Assembling Genomes from Nanopore and Illumina Reads

Test and grade genome-scale metabolic models (GEMs).

Simple bacterial assembly and annotation pipeline

An application to gather statistics for the nf-core community, build with FastAPI, Pydantic, Celery and SQLAlchemy.

UNDER CONSTRUCTION: pipeline for liver CT analysis

Python package with helper tools for the nf-core community.

Config files used to define parameters specific to compute environments at different Institutions

UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline

See the main fork of this repository here >>> https://github.com/nf-core/nanoseq

Compilation of training guides

A nextflow workflow to build referenceseeker DBs on the fly

Test data to be used for automated testing with the nf-core pipelines

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.