Robust, flexible and resource-efficient pipelines using Go and the commandline

A language and runtime for distributed, incremental data processing in the cloud

Compute over Data framework for public, transparent, and optionally verifiable computation

Rapid large-scale prokaryote pan genome analysis

Package for fetching metadata and downloading data from SRA/ENA/GEO

Analysis Pipeline for Single Cell ATAC-seq

Whole Genome Sequencing analysis, WGS analysis

Finds SNP sites from a multi-FASTA alignment file

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

GCP for Bioinformatics Researchers

A tool to circularize genome assemblies

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Antimicrobial Resistance Identification By Assembly

ATAC-seq and DNase-seq processing pipeline

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

NGLess: NGS with less work

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Analyze your RNA sequencing data without writing a single line of code