List of software/websites/databases/other stuff for genome engineering

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

Mining CRISPRs in Environmental Datasets

CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

Cutting-edge Full-stack AI Platform delivered as a SaaS (Software as a Service). Built on a robust technology stack, integrated with powerful APIs such as OpenAI and Replicate, offers a seamless experience for code generation, conversation simulation, image creation, music composition, and video generation.

Synthego ICE - Inference of CRISPR Editing software

FlashFry: The rapid CRISPR target site characterization tool

🌎 Complex Topics Explained For Your Level And Background. ✏️

SpacePHARER CRISPR Spacer Phage-Host pAiRs findER

Predicting Cell Health with Morphological Profiles

The CRISPR assembler

A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).

Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)

A better, faster way to count guides in CRISPR screens.

Flexible analysis of high-content CRISPR screening

Comprehensive design of CRISPR gRNAs for nucleases and base editors

A software tool for personalized and allele-specific CRISPR editing.

A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more

GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens

On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs