R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
-
Updated
Jan 6, 2024 - R
#
single-cell-analysis
Here are 185 public repositories matching this topic...
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
scrna-seq shiny-apps single-cell shinyapps single-cell-genomics single-cell-rna-seq single-cell-analysis single-cell-atac-seq seurat single-cell-omics scrna-seq-analysis single-cell-sequencing shiny-app scanpy scatac-seq anndata scrna-pipeline seurat-objects single-cell-pipeline
-
Updated
May 21, 2024 - R
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
single-cell-analysis spatial-transcriptomics cell-cell-interaction cell-cell-communication microenvironment
-
Updated
Dec 11, 2024 - R
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
bioinformatics immunology t-cell-receptor tcr rep-seq single-cell ig immunoglobulin immunoinformatics tcr-repertoire ig-repertoire single-cell-analysis bcr immune-repertoire bcr-repertoire immune-repertoire-data immune-repertoire-analysis b-cell-receptor repertoire-analysis airr-analysis
-
Updated
Apr 9, 2024 - R
Community-provided extensions to Seurat
-
Updated
Nov 22, 2024 - R
Analysis Pipeline for Single Cell ATAC-seq
machine-learning-algorithms sequencing epigenetics bioinformatics-pipeline single-cell-analysis single-cell-atac-seq
-
Updated
Apr 27, 2023 - R
PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
visualization python bioinformatics heatmap plot pandas matplotlib single-cell-analysis complex-heatmaps data-visualization-python complexheatmap clustermap
-
Updated
Nov 26, 2024 - Python
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
-
Updated
Jul 8, 2024 - Python
Haplotype-aware CNV analysis from single-cell RNA-seq
cancer-genomics single-cell phylogeny single-cell-rna-seq single-cell-analysis cnv-detection spatial-transcriptomics lineage-tracing
-
Updated
Dec 5, 2024 - R
Tutorial for scRNA-seq data analysis beginners using R
-
Updated
Apr 18, 2024
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
-
Updated
Dec 11, 2024 - R
A collection of 50+ trajectory inference methods within a common interface 📥📤
bioinformatics-algorithms single-cell-rna-seq single-cell-analysis trajectory-inference-methods trajectory-inference pseudotemporal-ordering
-
Updated
Dec 21, 2023 - R
Context specific and dynamic gene regulatory network reconstruction and analysis
network-inference network-visualization network-analysis single-cell-analysis gene-regulatory-network dynamic-network single-cell-multiomics single-cell-network
-
Updated
Aug 27, 2024 - Python
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
bioinformatics statistical-methods data-visualization dimensionality-reduction single-cell-genomics single-cell-rna-seq nonnegative-matrix-factorization single-cell-analysis single-cell-atac-seq
-
Updated
Aug 2, 2023 - R
Cluster single cells and analyze cell clade relationships with colorful visualizations.
visualization bioinformatics-pipeline single-cell bioinformatics-algorithms single-cell-rna-seq single-cell-analysis
-
Updated
Oct 28, 2024 - Haskell
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
hmm bioinformatics bayesian transcriptomics subpopulation heterogeneity single-cell-rna-seq single-cell-analysis cnv-detection
-
Updated
Jul 19, 2021 - R
R package to visualize gene expression data based on weighted kernel density estimation
-
Updated
Feb 27, 2024 - R
Spatial-Linked Alignment Tool
bioinformatics deep-learning spatial-data single-cell single-cell-analysis graph-neural-networks spatial-transcriptomics
-
Updated
Jun 8, 2024 - Python
Improve this page
Add a description, image, and links to the single-cell-analysis topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the single-cell-analysis topic, visit your repo's landing page and select "manage topics."