Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and melting curve estimation.
iFISH Probe Design: a Python3 package to build iFISH probes.
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
Tool for generating optimized nucleic acid biosensor sequences
ifpd2: a Python3.7+ package to build iFISH probes
Custom routes, pages and files for iFISH4U website.
Software suite for oligonucleotide native MS data treatment
An open-source platform for managing DNA synthesis processes.
Oligonucleotide Calculator
Reference genome annotation file processing toolset
Command-line oligonucleotide frequency analysis tool
This software is used to automate workflow. It is used to compose a working protocol and calculate reagent for oligonucleotide synthesis.
☣️ Convert Oligonucleotides to Literal DNA Strand Sequences
Documents and scripts for analysis of oligonucleotide synthesis errors.
K-Mer management tools
A tool for RNA mass spectrometry
⛓️ Automating construction of oligo library sequences for oligo array synthesis.
A simplistic Shiny app for observing mutation data.
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