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This policy brief summarizes the background, evidence and insights from the innovative governance modelling and analysis work developed in Indonesia under the "Governance Innovation for Sustainable Development of Food Systems” subprogramme. In addition, the brief offers guiding points and recommendations to support Indonesia's agrifood systems transformation efforts.The FVC subprogramme was carried out between 2020 and 2023 with funds from FAO's Flexible Voluntary Contribution (FVC). Together with Indonesia's national agency for planning and the Ministry of Agriculture as co-convener, the subprogramme supported the Directorate for Food and Agriculture in the Ministry of National Development Planning (BAPPENAS) leading the consolidation and implementation of the agrifood systems transformation agenda, including the UNFSS follow-up.The modelling and analytical work was conducted by a pool of researchers from the Christian Albrechts University of Kiel (CAU), the International Food Policy Research Institute (IFPRI), the International Institute for Applied Systems Analysis (IIASA), and the International Institute for Sustainable Development (IISD). The researchers elaborated their analysis on the concrete priorities of the country and provided insights about the agrifood systems’ performance, mapping synergies and potential trade-offs across identified interventions. The information package included an examination of the interests, roles, and contributions of stakeholders, allowing for the identification of alliances and coordination needed to ensure the coordination needed to ensure the political feasibility of their agrifood systems transformation plans.