FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.

Creates a simple OTU table from Kraken2 report.

a simple python script for "grafting" on novel sequences to a custom Kraken2 database

An awesome BCL demultiplexing and FastQ quality-control pipeline

#Scripts to create Kraken2 database of PAFTOL V2.0 Angio353 genes. An excellent database for taxonomic identification of plants. #https://treeoflife.kew.org/ #https://github.com/DerrickWood/kraken2/wiki #Prior to using this script, download and install kraken2 and make sure it is working and in your PATH. #Make sure the location of the python sc…

A LatchBio workflow for running Kraken2