A simple nextflow pipeline for running kraken2 and bracken in a docker container
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Mar 4, 2021 - Nextflow
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bracken
Here are 6 public repositories matching this topic...
Creates a simple OTU table from Kraken2 report.
bioinformatics
metagenomics
python3
data-analysis
metagenomic-analysis
otu-table
kraken2
bracken
commmand-line
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Updated
Oct 15, 2024 - Python
A Shiny app for taxonomic abundance visualization
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Updated
May 6, 2024 - R
This script filters low abundant reads from Bracken outputs for downstream analyses
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Nov 30, 2021 - Shell
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Jul 9, 2019 - Dockerfile
Here we discuss strategies and workflows to analyse metagenomics datasets
python
r
pipelines
metagenomics
kraken
dada2
amplicon-sequencing
qiime2
deblur
bracken
epi2me
shotgun-metagenomics
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Dec 25, 2023
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