tools for working with genome variation graphs

Sequence-to-graph mapper and graph generator

Tools for manipulating sequence graphs in the GFA and rGFA formats

De novo genome assembly and multisample variant calling

Genome inference from a population reference graph

Modular Multi-scale Integrated Genome Graph Browser

A modern genomics framework for julia

visual analysis of your VCF files

Toolkit for VNTR genotyping and repeat-pan genome graph construction

Linear-time, low-memory construction of variation graphs

Sparse Binary Relation Representations for Genome Graph Annotation

Modifies an assembly with sequencing reads to ensure all reads align end-to-end on the assembly

Calculate Peak-to-Trough Ratio (PTR), plot coverage graph, and perform quality control over contigs in a single pipeline integrating Glimmer3, Bowtie2, Sickle, and algorithms in R.

This is experiment to measure performance in vg recalibrate, testing different models.

Locate k-mers in variation graphs using GCSA2

A tool for modelling graphs of genetic variation.