Remove list-of-update-sites include

It was simply a link to the list of update sites. No other pages get special include treatment; a plain link suffices.
imagej · May 19, 2021 · 0c27a69 · 0c27a69
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diff --git a/_includes/list-of-update-sites b/_includes/list-of-update-sites
diff --git a/_pages/develop/distributing.md b/_pages/develop/distributing.md
@@ -48,7 +48,7 @@ The first goal is to get your extension into the hands of users.
       <td style="background: #dfd; vertical-align: top">
         <ul>
           <li><strong><a href="/update-sites/setup">Create your update site</a></strong>, then <strong><a href="/update-sites/setup#uploading-files-to-your-update-site">upload your extension to it</a></strong>.</li>
-          <li>You may add your update site to the list of built-in sites by editing the <strong>{% include list-of-update-sites%}</strong> page.</li>
+          <li>You may add your update site to the list of built-in sites by editing the <strong>[list of update sites](/list-of-update-sites)</strong> page.</li>
           <li>To release a new version, <strong><a href="/update-sites/setup#uploading-files-to-your-update-site">upload it to the update site</a></strong>.</li>
         </ul>
       </td>

diff --git a/_pages/help/bug-reporting-best-practices.md b/_pages/help/bug-reporting-best-practices.md
@@ -93,7 +93,7 @@ The [Report a Bug](/help/report-a-bug) dialog provides several pieces of critica
 -   Activated update sites
 -   Files not up-to-date
 
-The {% include list-of-update-sites content='default update sites' %} are intended to be fairly stable, but if you have additional update sites enabled there can be a risk of skewed or out of date dependencies (due to changes in core libraries), and some update sites are intentionally experimental.
+The [default update sites](/list-of-update-sites) are intended to be fairly stable, but if you have additional update sites enabled there can be a risk of skewed or out of date dependencies (due to changes in core libraries), and some update sites are intentionally experimental.
 
 Furthermore, if you have any **LOCAL\_ONLY** or **MODIFIED** files, their behavior can not be guaranteed - as they do not match what's on the active update sites and thus can not be automatically updated in response to changes in their dependencies.
 
@@ -112,7 +112,7 @@ In cases where it is clear which class or classes are causing problems, you can
 5.  Select `Manage Update Sites` and disable the update site identified in 4.
 6.  Repeat 1-5 until your problem is resolved.
 
-**NOTICE:** During this process it is critical to keep in mind that update sites take precedence in the {% include list-of-update-sites content='order they are declared' %} - update sites lower on the list will overwrite components in sites higher on the list.
+**NOTICE:** During this process it is critical to keep in mind that update sites take precedence in the [order they are declared](/list-of-update-sites) - update sites lower on the list will overwrite components in sites higher on the list.
 
 ### Binary search through your external plugins
 

diff --git a/_pages/help/faq.md b/_pages/help/faq.md
@@ -195,7 +195,7 @@ Yes, see the [call-modern-from-legacy](https://github.com/imagej/tutorials/tree/
 
 ## What is the difference between Fiji and ImageJ?
 
-Fiji is a *distribution* of ImageJ: it bundles the core ImageJ application with a curated selection of plugins pre-installed. Specifically, those plugins found on the {% include list-of-update-sites content='Fiji update site' %}.
+Fiji is a *distribution* of ImageJ: it bundles the core ImageJ application with a curated selection of plugins pre-installed. Specifically, those plugins found on the [Fiji update site](/list-of-update-sites).
 
 ## How do I install Fiji?
 

diff --git a/_pages/news/2013-06-12-imagej-v2-0-0-beta-7.md b/_pages/news/2013-06-12-imagej-v2-0-0-beta-7.md
@@ -48,7 +48,7 @@ Thresholds are created by the Adjust Threshold command. This command It utilizes
 
 The ImageJ updater has been enhanced to support "personal" update sites, which are hosted at [http://sites.imagej.net/](http://sites.imagej.net/), in a subdirectory matching your account on the [ImageJ wiki](/) (which is also the [Fiji wiki](https://fiji.sc/), at least for the time being). In this way, every ImageJ user can have their own update site to distribute their plugins via the ImageJ updater, without needing to create a web site or find hosting space on a web server.
 
-The "Manage update sites" dialog in the advanced mode also got a major overhaul: it now presents a list of pre-defined update sites (read from the {% include list-of-update-sites%}
+The "Manage update sites" dialog in the advanced mode also got a major overhaul: it now presents a list of pre-defined update sites (read from the [list of update sites](/list-of-update-sites)
 ) for easy activation, and allows convenient initialization of a personal update site ([http://sites.imagej.net/](http://sites.imagej.net/)).
 
 See below for a complete list of updater improvements.
@@ -59,7 +59,7 @@ We have continued to flesh out example code for developers. There are now [nine
 
 ### SLIM Plugin
 
-The SLIM Plugin is being refactored for ImageJ2 but is not yet available. Meanwhile, the version available from the {% include list-of-update-sites content='LOCI update site' %} can be used for lifetime fitting with Fiji. See the [SLIM Curve](/plugins/slim-curve) page for details.
+The SLIM Plugin is being refactored for ImageJ2 but is not yet available. Meanwhile, the version available from the [LOCI update site](/list-of-update-sites) can be used for lifetime fitting with Fiji. See the [SLIM Curve](/plugins/slim-curve) page for details.
 
 ### Compatibility
 
@@ -147,7 +147,7 @@ The following is a more detailed list of changes for this release:
 -   The SSH uploader now works even with OS X servers.
 -   The updater handles Micro-Manager's circular dependency between `MMJ_.jar` and `MMCore.jar` gracefully now.
 -   The updater has special handling for DropBox-backed update sites.
--   The "Manage Update Sites" dialog in the advanced mode got a major overhaul: it now presents a list of pre-defined update sites (read from the {% include list-of-update-sites%}
+-   The "Manage Update Sites" dialog in the advanced mode got a major overhaul: it now presents a list of pre-defined update sites (read from the [list of update sites](/list-of-update-sites)
 ) for easy activation, and allows convenient initialization of a personal update site ([http://sites.imagej.net/](http://sites.imagej.net/)).
 
 ### MiniMaven

diff --git a/_pages/news/2013-11-04-plugins-for-making-scientific-figures.md b/_pages/news/2013-11-04-plugins-for-making-scientific-figures.md
@@ -14,7 +14,7 @@ Mutterer, J. & Zinck, E. (2013) **Quick-and-clean article figures with FigureJ**
 
 Aigouy B. & Mirouse V. (2013) **ScientiFig: a tool to build publication-ready scientific figures** *Nature Methods*, 10, 1048 <doi:10.1038/nmeth.2692>
 
-Each tool is available in Fiji through its own {% include list-of-update-sites content='**Update Site**' %}.
+Each tool is available in Fiji through its own [**Update Site**](/list-of-update-sites).
 
 Finally the OMERO team is also rolling out a Figure making plugin showcased here http://www.youtube.com/watch?v=anJPPx7uoUM.
 

diff --git a/_pages/news/2014-01-25-jslic-superpixels-algorithm-via-cmp-bia.md b/_pages/news/2014-01-25-jslic-superpixels-algorithm-via-cmp-bia.md
@@ -8,7 +8,7 @@ Another contribution from professional computer vision researchers to Fiji is th
 
 It is brought to you from the [**Center for Machine Perception**](http://cmp.felk.cvut.cz/) (CMP) which is a university research center performing fundamental and applied research in computer vision, robotics, machine learning, pattern recognition, and mathematics. Jiri is a member of the the [**Biomedical Imaging Algorithms group**](http://www.fel.cvut.cz/vv/tymy/mip.html) (BIA) headed by **Jan Kybic** who develops new algorithms for biomedical image processing. Thus **CMB-BIA** tools.
 
-The CMP-BIA tools is a package for ImageJ/Fiji which will perform image segmentation and registration. For a fast integration of their plugins into Fiji you can use their own {% include list-of-update-sites content='update site' %}.
+The CMP-BIA tools is a package for ImageJ/Fiji which will perform image segmentation and registration. For a fast integration of their plugins into Fiji you can use their own [update site](/list-of-update-sites).
 
 We are exploiting here our Czech connections and are looking forward to many more cool tools coming to Fiji from CMP-BIA.
 

diff --git a/_pages/news/2014-01-25-low-light-tracking-tool.md b/_pages/news/2014-01-25-low-light-tracking-tool.md
@@ -10,7 +10,7 @@ The software is a tool for the tracking of low-light sub-resolution objects in f
 
 Krull, A., Steinborn A., Ananthanarayanan V., Ramunno-Johnson D., Petersohn U., Tolic-Norrelykke I. M. **A divide and conquer strategy for the maximum likelihood localization of low intensity objects.** *Opt. express*, 22, no. 1, pp. 210-228, (2014)
 
-As usual it is available through its own {% include list-of-update-sites content='update site' %}.
+As usual it is available through its own [update site](/list-of-update-sites).
 
 Thanks to Alex for this great work and Iva for being such a steadfast supporter of Fiji.
 

diff --git a/_pages/news/2014-01-25-mosaicsuite-for-fiji.md b/_pages/news/2014-01-25-mosaicsuite-for-fiji.md
@@ -22,7 +22,7 @@ I. F. Sbalzarini and P. Koumoutsakos. **Feature Point Tracking and Trajectory An
 
 All information on how to install the tools, documentation and developer information is available on the [MOSAIC group website](http://mosaic.mpi-cbg.de/?q=downloads/imageJ).
 
-The plugins are available in Fiji through a dedicated {% include list-of-update-sites content='**update site**' %}.
+The plugins are available in Fiji through a dedicated [**update site**](/list-of-update-sites).
 
 We are looking forward to more contributions from the MOSAIC group in the future.
 

diff --git a/_pages/news/2014-03-27-imagej2-and-fiji-recent-milestones.md b/_pages/news/2014-03-27-imagej2-and-fiji-recent-milestones.md
@@ -8,7 +8,7 @@ Every so often, it is good to look back at a project's progress over the past co
 
 The most important feature of Fiji (the ImageJ distribution for the life sciences) is most certainly the [updater](/plugins/updater). Two years ago, the updater source code was moved from Fiji into ImageJ2. Ever since, when you call {% include bc path="Help|Update Fiji" %}, it is actually the ImageJ2 updater performing her duties. Rationale for the move: Fiji and ImageJ2 collaborate very closely (consistent with {% include person id='dscho' %} joining [LOCI](http://loci.wisc.edu/), the home of ImageJ2, in the fall of 2011), and it was obvious that ImageJ2 should play the role of generic image processing core while Fiji is dedicated to support the life sciences.
 
-In the wake of the transition, many latent bugs were discovered and fixed, hardening the updater. It also allowed us to offer a very cool feature: personal update sites. Anybody with a Fiji wiki account (which in this case just serves as a convenient vehicle for ImageJ2) can register their personal update site onto which they can upload plugins and even macros. By adding the site to the {% include list-of-update-sites%}
+In the wake of the transition, many latent bugs were discovered and fixed, hardening the updater. It also allowed us to offer a very cool feature: personal update sites. Anybody with a Fiji wiki account (which in this case just serves as a convenient vehicle for ImageJ2) can register their personal update site onto which they can upload plugins and even macros. By adding the site to the [list of update sites](/list-of-update-sites)
  page, every ImageJ2 user (which includes all Fiji users; Fiji includes ImageJ2!) can follow that update site by pressing the "Manage update sites" button in the updater and checking the appropriate site's checkbox. Just like the Fiji wiki and the other ImageJ2 web resources, the update sites are served from LOCI's web servers.
 
 The list of update sites sees [continued growth](https://github.com/imagej/list-of-update-sites/commits/master/sites.yml), and we encourage their use e.g. for macros or plugins associated with publications. It simply enhances the impact of a paper if its methods are available at the users' fingertips.

diff --git a/_pages/news/2015-11-30-imagej-winter-priorities.md b/_pages/news/2015-11-30-imagej-winter-priorities.md
@@ -10,7 +10,7 @@ Here is a status update from the ImageJ team at [LOCI](/orgs/loci): where we're
 
 First and foremost, we're on the cusp of submitting a paper describing the structure of ImageJ2, which is a critical step towards future funding efforts.
 
-On the technical side, {% include person id='ctrueden' %} just wrote the first ImageJ code using Java 8 functionality, which will continue drive our {% include github org='imagej' repo='imagej' issue='135' label='need to migrate' %}. One recent and fundamental step in this direction is the release of the {% include list-of-update-sites content='3D update site' %}: providing Java 7- and 8-compatible versions of 3D ImageJ plugins (previously relegated to Java 6).
+On the technical side, {% include person id='ctrueden' %} just wrote the first ImageJ code using Java 8 functionality, which will continue drive our {% include github org='imagej' repo='imagej' issue='135' label='need to migrate' %}. One recent and fundamental step in this direction is the release of the [3D update site](/list-of-update-sites): providing Java 7- and 8-compatible versions of 3D ImageJ plugins (previously relegated to Java 6).
 
 ## Next steps
 

diff --git a/_pages/plugins/bar.md b/_pages/plugins/bar.md
@@ -27,7 +27,7 @@ categories: [Analysis,Citable,Filtering,Image annotation,Plugins,Scripting,Segme
 
  **BAR**: A collection of **B**roadly **A**pplicable **R**outines.
 
-The collection contains [Macros](/scripting/macro), [Scripts](/scripting) and [Plugins](/plugins) focused on Data Analysis, Image Annotation and Image Segmentation. It is curated using {% include github org='tferr' repo='Scripts\#ij-bar' label='GitHub' %} and distributed as an optional {% include list-of-update-sites content='update site' %}.
+The collection contains [Macros](/scripting/macro), [Scripts](/scripting) and [Plugins](/plugins) focused on Data Analysis, Image Annotation and Image Segmentation. It is curated using {% include github org='tferr' repo='Scripts\#ij-bar' label='GitHub' %} and distributed as an optional [update site](/list-of-update-sites).
 
 ## Installation
 

diff --git a/_pages/plugins/find-peaks.md b/_pages/plugins/find-peaks.md
@@ -18,7 +18,7 @@ categories: [Scripting,Analysis,Plugins]
 {% endcapture %}
 {% include info-box software='ImageJ/Fiji' name='Find Peaks' maintainer='[ BAR update site](/plugins/bar)' author=author filename=filename source=source released='February 2014' category='[Analysis](/plugin-index#analysis), [Scripting](/plugin-index#scripting), [Plugins](/plugin-index)' %}
 
-A [BAR](/plugins/bar) script (written in [BeanShell](/scripting/beanshell)) that retrieves local maxima and minima from an ImageJ plot. The easiest way to install *Find Peaks* is by [subscribing](/plugins/bar#installation) to the BAR {% include list-of-update-sites content='update site' %}.
+A [BAR](/plugins/bar) script (written in [BeanShell](/scripting/beanshell)) that retrieves local maxima and minima from an ImageJ plot. The easiest way to install *Find Peaks* is by [subscribing](/plugins/bar#installation) to the BAR [update site](/list-of-update-sites).
 
 ## Options
 

diff --git a/_pages/plugins/fourier-ring-correlation.md b/_pages/plugins/fourier-ring-correlation.md
@@ -52,7 +52,7 @@ We recommend you use a calibrated image so that your results are in calibrated u
 
 # Installation
 
-This plugin is available from the {% include list-of-update-sites content='PTBIOP Update Site' %} This places it in a "BIOP" Folder in the plugins directory of Fiji/ImageJ
+This plugin is available from the [PTBIOP Update Site](/list-of-update-sites) This places it in a "BIOP" Folder in the plugins directory of Fiji/ImageJ
 
 # Use
 

diff --git a/_pages/plugins/max-inscribed-circles.md b/_pages/plugins/max-inscribed-circles.md
@@ -31,7 +31,7 @@ That way when there are plenty of circles that are the same size, we can draw th
 
 ## Installation
 
-This plugin is available from the {% include list-of-update-sites content='BIOP Update Site' %} This places it in a "BIOP" Folder in the plugins directory of Fiji/ImageJ
+This plugin is available from the [BIOP Update Site](/list-of-update-sites) This places it in a "BIOP" Folder in the plugins directory of Fiji/ImageJ
 
 ## Use
 

diff --git a/_pages/plugins/multi-stack-montage.md b/_pages/plugins/multi-stack-montage.md
@@ -16,7 +16,7 @@ This plugin brings a bit more functionality that was not available using the **M
 
 ## Installation
 
-This plugin is available from the {% include list-of-update-sites content='PTBIOP Update Site' %} This places it in a "BIOP" Folder in the plugins directory of Fiji/ImageJ
+This plugin is available from the [PTBIOP Update Site](/list-of-update-sites) This places it in a "BIOP" Folder in the plugins directory of Fiji/ImageJ
 
 ## Use
 

diff --git a/_pages/plugins/neuroanatomy/index.md b/_pages/plugins/neuroanatomy/index.md
@@ -25,7 +25,7 @@ The requirements to run the Neuroanatomy suite of plugins are twofold: i) [Fiji]
 
 1.  Run [{% include bc path='Help|Update...'%}](/update-sites)
 2.  Click *Manage update sites*
-3.  Select the *Neuroanatomy* checkbox (see also {% include list-of-update-sites%}
+3.  Select the *Neuroanatomy* checkbox (see also [list of update sites](/list-of-update-sites)
 )
 4.  Click *Apply changes* and Restart ImageJ
 

diff --git a/_pages/plugins/shape-filter.md b/_pages/plugins/shape-filter.md
@@ -47,4 +47,4 @@ Wagner, T and Lipinski, H 2013. IJBlob: An ImageJ Library for Connected Componen
 
 # Installation
 
-You could simply use our update site "{% include list-of-update-sites content='Biomedgroup' %}" to install the shape filter plugin.
+You could simply use our update site "[Biomedgroup](/list-of-update-sites)" to install the shape filter plugin.