scrna-seq-data

Here are 21 public repositories matching this topic...

seandavi / awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Updated Nov 14, 2024

nsalomonis / altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

python bam-files clustering graphical-interface pagerank bioinformatics-pipeline alternative-splicing command-line-tool splicing-quantification network-analysis pathway-analysis rna-seq-data scrna-seq-data cell-cycle cell-type-classification splicing-visualization fastq-anaysis single-cell-splicing marker-gene-analysis louvain-community-detection

Updated Jul 7, 2022
Python

vandijklab / cell2sentence-ft

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Cell2Sentence turns scRNA-seq data into text for LLM training.

bioinformatics scrna-seq single-cell scrna-seq-data

Updated Sep 4, 2024
Python

GfellerLab / SuperCell

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Coarse-graining of large single-cell RNA-seq data into metacells

r-package scrna-seq-data coarse-graining scrna-seq-analysis

Updated Aug 29, 2024
R

immunomind / covid19

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🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

bioinformatics t-cell antibody rep-seq scrna-seq-data immunoinformatics computational-immunology immune-repertoire-data covid-19 sars-cov-2 covid-19-data single-cell-data airr-analysis

Updated May 21, 2020

randel / MIND

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Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution

scrna-seq-data bulk-gene-expression

Updated May 3, 2023
HTML

oscar-franzen / PanglaoDB

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metadata and data from the database

scrna-seq scrna-seq-data

Updated Jan 29, 2020

mckellardw / scMuscle

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The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcriptomic data

scrna-seq-data scrna-seq-analysis scrna-pipeline

Updated Nov 30, 2022
HTML

AllenInstitute / tasic2016data

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Single cell transcriptomic data from Tasic, et al. (2016)

transcriptomics scrna-seq-data scrattch

Updated Jan 9, 2019
R

nlawlor / V-SVA

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V-SVA: An R Shiny application for detecting and annotating hidden sources of variation in single cell RNA-seq data

visualization r shiny transcriptomics scrna-seq-data single-cell-rna-seq surrogate-variable-analysis

Updated Mar 3, 2020
R

multitalk / miRTalk

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Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data

scrna-seq-data mirna single-cell-rna-seq exosomes extracellular-vesicles cell-cell-interaction cell-cell-communication microvesicles

Updated Oct 7, 2024
HTML

umangv / picturedrocks

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PicturedRocks Single Cell Analysis Tool

python scrna-seq single-cell scrna-seq-data university-of-michigan

Updated Dec 27, 2020
Python

Gina727 / scRNA-seq-analyst

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ScRNA-seq Analysis Copilot serves as an interactive agent to learn single cell sequencing, answering questions and helping new learners to practice analysis.

api ai scrna-seq scrna-seq-data scrna-seq-analysis chatgpt

Updated Nov 8, 2024
R

Munfred / wormcells-data

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Gene expression on C. elegans single cells

scrna-seq scrna-seq-data scrna-seq-analysis

Updated Jun 3, 2021
HTML

ankitbioinfo / nico_tutorial

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A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.

scrna-seq scrna-seq-data scrnaseq nico scrna-seq-analysis spatial-transcriptomics niche-modelling merfish seqfish niche-covariation