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@GfellerLab

Computational Cancer Biology Lab

Lab from David Gfeller from the University of Lausanne

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  1. EPIC EPIC Public

    Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.

    R 75 21

  2. SuperCell SuperCell Public

    Coarse-graining of large single-cell RNA-seq data into metacells

    R 68 11

  3. MixMHC2pred MixMHC2pred Public

    HLA-II ligand predictor.

    C++ 35 10

  4. MixMHCpred MixMHCpred Public

    HLA-I ligand predictor

    Python 29 8

  5. MixTCRpred MixTCRpred Public

    Predictor of TCR-epitope interactions

    Python 18 6

  6. PRIME PRIME Public

    PRedictor of IMmunogenic Epitopes

    C++ 17 4

Repositories

Showing 10 of 20 repositories
  • SuperSpot Public
    GfellerLab/SuperSpot’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 11, 2024
  • exercises_intro_bioinfo_clinique Public
    GfellerLab/exercises_intro_bioinfo_clinique’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 4, 2024
  • EPIC-ATAC_manuscript Public

    Code used for the analyses performed in the EPIC-ATAC manuscript

    GfellerLab/EPIC-ATAC_manuscript’s past year of commit activity
    R 2 0 0 0 Updated Oct 8, 2024
  • EPIC-ATAC Public
    GfellerLab/EPIC-ATAC’s past year of commit activity
    R 1 0 0 0 Updated Oct 1, 2024
  • SuperCell Public

    Coarse-graining of large single-cell RNA-seq data into metacells

    GfellerLab/SuperCell’s past year of commit activity
    R 68 GPL-3.0 11 1 0 Updated Aug 29, 2024
  • MixTCRpred Public

    Predictor of TCR-epitope interactions

    GfellerLab/MixTCRpred’s past year of commit activity
    Python 18 6 0 0 Updated Aug 27, 2024
  • MetacellAnalysisToolkit Public

    Toolkit for metacell analysis

    GfellerLab/MetacellAnalysisToolkit’s past year of commit activity
    R 13 2 4 0 Updated Aug 8, 2024
  • MixMHCpred Public

    HLA-I ligand predictor

    GfellerLab/MixMHCpred’s past year of commit activity
    Python 29 8 1 0 Updated May 16, 2024
  • PRIME Public

    PRedictor of IMmunogenic Epitopes

    GfellerLab/PRIME’s past year of commit activity
    C++ 17 4 1 0 Updated May 16, 2024
  • MetacellAnalysisTutorial Public

    Tutorial on construction and analysis of metacells

    GfellerLab/MetacellAnalysisTutorial’s past year of commit activity
    TeX 7 0 0 0 Updated Mar 7, 2024
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