Course on bioinformatics (linux intro + DNA sequencing pipeline) for the Fighting Malaria Across Borders training programme by the Institute of Tropical Medicine and VLIR-UOS (Belgium)

Code repository for the manuscript: Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni

PathoPore - Longer Sequences and NextFlow Faster Analysis

🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics

galaxy wf detect pathogens in MinION data

MIP_ORACLE: Identifies unique target regions with diagnostic significance in pathogens.

PathoGFAIR: Galaxy FAIR Workflows for Pathogen Detection and Samples Comparison

Multiplexed SSR marker analysis of Diplocarpon coronariae reveals clonality within samples from Middle Europe and genetic distance from Asian and North American isolates

Untangling the pea root rot complex leads to the identification of microbial markers for plant health

Hugo pathogens portal theme

Tracking the movement of cereal blast caused by Pyricularia

Code repository for the publication: "Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration"

This is APRANK, an Antigenic Protein and Peptide Ranker.

Systematic assessment of the impacts of climate change on human pathogenic diseases

Model to simulate the population dynamics of four Aedes mosquito species.

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

Materials and presentation for the 2023 ISB Microbiome course.

A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.