Misc. Nextflow scripts

This is a nextflow pipeline for variant calling of low frequency variants in panel/WES high-throughput data.

Paired Sequence Assembler using Flowcraft/Nextflow/Deploit

PathoPore - Longer Sequences and NextFlow Faster Analysis

Align SARS-CoV-2 sequences against a reference genome, and trim UTR sequences

NextFlow pipeline for Virus Variant calling and de novo Assembly of Nanopore and Illumina Reads

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

Simulation of false tandem substitutions from input sequencing data

Nextflow wrapper for biohansel

A containerized nextflow pipeline designed to annotate prokaryote genomes.

Nextflow Wrapper for Mykrobe

A DEEP LEARNING APPROACH TO PREDICTING POTENTIAL VIRUS SPECIES CROSSOVER USING CONVOLUTIONAL NEURAL NETWORKS AND VIRAL PROTEIN SEQUENCE PATTERNS

nf-pipeline template for custom data analysis, renders report

Python library to execute batches of jobs using nextflow.

How to channel sequencing reads from multiple subdirectories into nextflow pipeline

A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)

This repository contains the code for ShotgunMG, a Nextflow bioinformatic pipeline for high-resolution metagenomics

A nextflow pipeline for analysis and visualisation of NGS data using FastQC and Python Ploty Dash.

Nextflow translation for SAMSA2 metatranscriptomics pipeline. Tailored for running on WEHI Milton.

Nextflow analysis pipeline for hiCLIP and proximity ligation sequencing data