The repository contains a comprehensive pipeline for genome assembly and quality assessment, designed for genomic data analysis. It integrates various bioinformatics tools for accurate genome assembly.

Nextflow pipeline for MS-DAP, a downstream pipeline to generate statistical reports for MS data

A containerized nextflow pipeline designed to annotate prokaryote genomes.

RNA-seq for rare diseases pipeline using nextflow

A Nextflow pipeline for extracting, transforming, augmenting, and loading the MetaNetX contents into a SQL database.

A nextflow pipeline for analysis and visualisation of NGS data using FastQC and Python Ploty Dash.

Assemble the viral genome and perform the associated quality control (QC). Start with raw reads and one pre-built reference database in standard format (see README.md).

Paired Sequence Assembler using Flowcraft/Nextflow/Deploit

Simulation of false tandem substitutions from input sequencing data

Align SARS-CoV-2 sequences against a reference genome, and trim UTR sequences

Repository detailing a Nextflow pipeline to run mpileup variant callling on TF footprints.

Bases2fastq-nf is a bioinformatics pipeline used to demultiplex the raw data produced by the Element AVITI™ System using the Bases2Fastq Software.

In this repository , I explained how we can implement Nextflow workflow and extend to AWS batch integration

nextflow pipeline for annotation using homology

A nextflow pipeline for TCR repertoire building with MiXCR

Workflow to compress a whole directory from fastq files to spring with sequence check.

Nextflow Wrapper for Mykrobe

Nextflow wrapper for biohansel

How to channel sequencing reads from multiple subdirectories into nextflow pipeline