nf-core
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153 repositories
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline
- Generation and update of protein families
- Call and score variants from WGS/WES of rare disease patients.
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
- Assembly and binning of metagenomes
rnafusion
Public- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
- Pipeline for testing drug response prediction models in a statistically and biologically sound way.