A clojure wrapper for usearch, a fast open-source search & clustering engine for vectors.

USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE

Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.

Sequence analysis using USEARCH pipelines

This is a workflow for 16S rRNA analysis.

InDels analysis of CRISPR lines by NGS amplicon sequencing technology for a multicopy gene family.

These scripts were used to bioinformatically process the NGS data associated with the manuscript entitled "Illuminating the bacterial microbiome of Australian ticks from companion animals with next-generation sequencing", authored by Telleasha L. Greay, Kimberly L. Evasco, Megan L. Evans, Paola Magni, Una M. Ryan and Peter J. Irwin. The raw data…

Markdown documentation for USEARCH 11 (see drive5.com for offical docs)

Code and data used for analysis and estimation of invertebrate biodiversity on a temperate forested island (Hauturu) based on DNA barcodes and soil DNA metabarcoding data.

Iterative Cluster Expansion BLAST. Captures very divergent homologous sequences via gradual search space expansion.