Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data

One-stop shop for one-click NGS analyses from the command-line

Bioinformatics pipelines developed while working at the dept of Obs & Gynae

Methylome transfer engine (mxe)

📦 Bioconductor data package associated with the methyvim R package

💬 Talk: "methyvim: Data-Adaptive Estimation and Inference for Targeted Differential Methylation Analysis"