K-mer spectrum corrector based on Hadoop

Enumerate k-mers of a given string.

K-mer indexing and querying in RNA-Seq data

Tool for indexing and querying back-splice junctions of circular RNAs (circRNAs) in RNA-Seq datasets

Assembles a genome and finds true mutations among sequencing errors

K-mer search enabled fast bacterial DNA sequence retrieval with DNA sequence analysis of Pittsburgh rivers.

An easy way to visualize protein k-mer signature

Predicts anticancer peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.

A method for creating a dictionary of all k-mer abundances within a fasta file along with their corresponding Godel numbers.

Benchmark of hashing k-mers in Golang

Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.

Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes

A read classification tool based on Interleaved Bloom Filters

Generate DNA sequences minimizing microhomology

A PHP hash table optimized for counting short gene sequences for use in Bioinformatics.

fast and comprehensive k-mer counting package

A fork of the original https://github.com/medvedevgroup/UST tool.

Mutation table of COVID-19 virus genome with all possible substitution mutations and corresponding 20-mers for mutation identification

This hackathon project aims to use a Convolutional Neural Network (CNN) to accurately identify promoter classes for DNA sequencing, leveraging spatial pattern recognition to enhance genetic analysis.

This repository contains the results and comparison visualization of circRNA candidates detected by circRNA prediction softwares.