Standardized data set for machine learning of protein structure
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Nov 18, 2020 - Python
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protein-sequence
Here are 50 public repositories matching this topic...
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
protein-structure
protein
representation-learning
protein-sequence
predicted-structures
pretraining
structure-aware
protein-language-model
alphafold2
foldseek
structural-alphbet
protein-llm
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Updated
Nov 19, 2024 - Python
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
deep-learning
protein-structure
pytorch
recurrent-neural-networks
language-model
protein-sequence
protein-embedding
protein-modeling
protein-representation-learning
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Updated
Jun 16, 2021 - Python
ProtFlash: A lightweight protein language model
bioinformatics
pretrained-models
protein-sequence
protein-representation-learning
protein-embeddings
protein-language-model
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Updated
Mar 2, 2024 - Python
De novo protein structure prediction using iteratively predicted structural constraints
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Jan 30, 2022 - C
Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
bioinformatics
structural-biology
protein-structure
protein
protein-design
protein-sequence
graph-neural-networks
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Updated
Mar 24, 2021 - Jupyter Notebook
A Text-guided Protein Design Framework, Nat Mach Intell 2024
protein-structure
protein
drug-design
protein-design
protein-sequence
ai4science
llm
foundation-model
large-language-model
protein-editing
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Updated
Jul 20, 2024 - Python
A Python 3 version of the protein descriptor package propy
python
bioinformatics
python3
protein-sequence
dipeptide-composition-descriptors
protein-descriptor
geary-autocorrelation-descriptors
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Updated
Feb 8, 2023 - Python
Guided Conditional Wasserstein GAN for De Novo Protein Design
protein-structure
protein
generative-model
generative-adversarial-networks
protein-design
protein-sequence
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Feb 23, 2021 - Roff
MOLeculAR structure annoTator
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Updated
Oct 2, 2024 - JavaScript
Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
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Updated
Oct 7, 2024 - Python
Deep learning based alignment-free method for protein family modeling and prediction
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Updated
Jul 31, 2018 - Python
Python Toolbox For Rosetta Silent Files Processing
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Updated
May 23, 2019 - Python
Web application for protein-ligand binding sites analysis and visualization
visualization
web
pdb
protein-structure
web-application
conservation
protein
webapp
analyses
protein-ligand-interactions
ligand
protein-homology
protein-sequence
conservation-scores
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Updated
Jan 9, 2023 - JavaScript
Simple visualisation tool for sequences' similarity in bioinformatics
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Updated
Apr 12, 2018 - Python
A curated list of awesome protein design research, software and resources.
bioinformatics
structural-biology
protein-structure
molecular-biology
protein-design
protein-protein-interaction
protein-sequence
structural-bioinformatics
protein-engineering
protein-folding
protein-structure-prediction
bioinformatics-tool
protein-function
alphafold
alphafold2
alphafold-multimer
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Updated
May 10, 2022
Python Toolbox For Rosetta Silent Files Processing
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Updated
Aug 2, 2021 - Python
A curated list of awesome Molecular Modeling And Drug Discovery 🔥
bioinformatics
structural-biology
protein-structure
drug-discovery
molecular-evolution
protein-sequence
protein-engineering
molecular-modeling
molecular-docking
alphafold
molecular-generation
alphafold2
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Updated
Jul 21, 2022
A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water
smith-waterman
needleman-wunsch
needle
water
global-alignment
sequence-alignment
emboss
protein-sequence
pairwise-alignment
local-alignment
nucleotide-sequence
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Updated
Oct 30, 2024 - Python
Interactive Protein Sequence VIsualization/Viewer - Interactive Circos
visualization
viewer
javascript-library
interactive-visualizations
amino-acid-sequence
protein-sequence
mutation-analysis
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Updated
May 5, 2024 - HTML
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