ITBE-Lab

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4 repositories

MSV-EVAL
Public
The experiments performed in State-of-the-art structural variant calling: What went conceptually wrong and how to fix it?
bioinformatics pan-genome structural-variants
Python
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MIT License
•1•1•0•0•Updated Jul 18, 2023Jul 18, 2023
MA
Public
The Modular Aligner and The Modular SV Caller
bioinformatics alignment read-aligners sequence-alignment fm-index structural-variation seeds
C++
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MIT License
•3•46•4•0•Updated Jul 18, 2023Jul 18, 2023
seed-evaluation
Public
Evaluation tools for "A performant bridge between fixed-size and variable-size seeding"
bioinformatics alignment read-aligners sequence-alignment fm-index k-mers minimizers
Python
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MIT License
•1•6•0•0•Updated Sep 22, 2020Sep 22, 2020
MA-EVAL
Public
Evalutation tool for aligners
bioinformatics evaluation alignment
Python
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MIT License
•0•1•0•0•Updated Sep 25, 2018Sep 25, 2018