This is a collection of code snippets that can be used to analyze aligners. This project needs to be configured in the settings.py file. Further, the paths in command_line_aligner.py need to be adjusted (it is possible to add or remove aligners by adding/deleting further child classes for CommandLine).

• create_accuracy_graph.py generates the accuracy and runtime analysis.
• misc.py computes the startup times and memory usage.
• ambiguity_distrib.py computes seed ambiguity for a genome. (requires MA with WITH_PYTHON=1)
• SV_analysis.py evaluates SV mapping quality.

The underlying data for all figures in link to final publication can be downloaded here: link