PoisonAlien
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basegraphics Public
Pretty plots using pure base graphics in R
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maftools Public
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
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trackplot Public
Generate IGV style locus tracks from bigWig files in R
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TCGAmutations Public
R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
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gtf2fasta Public
Tookit for gtf format conversion and sequence extraction
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PoisonAlien.github.io Public
https://poisonalien.github.io/
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squaRify Public
Minimal, zero dependancy package for drawing treemaps in R
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annovar2maf Public
Tiny python script to generate MAF files from output generated by standard annotation programs
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Variant_catalogue_pipeline Public
Forked from wassermanlab/Variant_catalogue_pipelineCAFE pipeline
HTML UpdatedOct 20, 2022 -
echtvar Public
Forked from brentp/echtvarusing all the bits for echt rapid variant annotation and filtering
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basecounts Public
A tool to extract ATGC/Indel read counts at user specific loci from BAM files
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somaticfreq Public
knowledge-based genotyping of cancer hotspots from the tumor BAM files
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COVID_rXiv Public
code for Visualizing COVID19 metadata from public sources
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noodles Public
Forked from zaeleus/noodlesBioinformatics I/O libraries in Rust
Rust MIT License UpdatedDec 27, 2020 -
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flatuicoloRs Public
Color palettes from https://flatuicolors.com/ in R
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ProjectTemplate Public
Forked from KentonWhite/ProjectTemplateA template utility for R projects that provides a skeletal project.
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bwtool Public
Forked from CRG-Barcelona/bwtoolA tool for bigWig files.
C Other UpdatedMay 23, 2018 -
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varscan_accessories Public
accessory scripts for processing varscan somatic/copynumber outputs.
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chiptk Public
optimized protocol for processing 50-bp SE ChIP-seq
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beadAnalyze Public
Automated differential expression analysis for Illumina beadarrays (HT12 V4 arrays).
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