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ucsc-browser

Here are 9 public repositories matching this topic...

PoisonAlien / trackplot

Generate IGV style locus tracks from bigWig files in R

locus ucsc-browser bigwigs igv-like

Updated Oct 28, 2024
R

epiRomics

Huising-Lab / epiRomics

An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.

transcription-factors rna-seq data-visualization epigenetics chip-seq histone atac-seq r-package enhancer transcription-factor-binding ucsc-browser regulatory-network epigenomics multi-omics enhancer-prediction chromatin-accessibiity regulome-analysis

Updated Nov 18, 2023
HTML

juvion / avalign

Process UCSC multiple alignment database, e.g. extract metadata, choose subset of species.

genomics sequence-alignment ucsc-browser

Updated Mar 11, 2020
Python

YogiOnBioinformatics / Assorted-Computational-Genomics-Data-Visualizations

Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee

bash r ngs computational-biology data-visualization pca-analysis data-analysis university-course heatmaps biplot motif-discovery ucsc-browser computational-genomics volcano-plot

Updated Jan 25, 2019
R

maximilianh / browserInstall

An install script for the UCSC Genome Browser

shell ucsc genome-browser ucsc-browser

Updated Mar 11, 2020
Shell

fhdsl / AnVIL_Book_Epigenetics_Intro

An introductory activity for epigenetics, or the idea of "nature versus nurture" in genetics. Learners use the UCSC Genome Browser.

course module epigenetics anvil ucsc-browser human-genomes

Updated Aug 6, 2024
CSS

dmalzl / genomap

An easy to use tool to generate heatmap like tracks for the UCSC Genome Browser

bioinformatics hacking ucsc-browser

Updated Jun 24, 2021
Python

metamaden / seq_answers

Sequencing data preprocessing

Updated Jun 18, 2018
R

Abrar2652 / oist-comparative-genomics

python bioinformatics r biopython shell-script comparative-genomics sorting-algorithms-implemented bash-script searching-algorithms genome-analysis ucsc-browser pairwise-alignment matching-algorithm matplotlib-pyplot

Updated May 17, 2024
Python

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