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Wikidata:Property proposal/Nextstrain identifier

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Nextstrain identifier

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Originally proposed at Wikidata:Property proposal/Natural science

   Not done
DescriptionIdentifier for a virus clade used by the Nextstrain project
Data typeString
Domainvirus (Q808)
Example 1SARS-CoV-2 Omicron variant (Q109739412) → 21K
Example 2SARS-CoV-2 Alpha variant (Q104376647) → 20I (V1)
Example 3SARS-CoV-2 Delta variant (Q107055182) → 21A, 21I, 21J
Example 4SARS-CoV-2 Gamma variant (Q104819269) → 20J (V3)
SourceNextstrain (Q89296216)
Expected completenessalways incomplete (Q21873886)
See alsoPANGO lineage code (P9632)
Wikidata projectWikiProject Taxonomy (Q8503033), WikiProject Medicine (Q4099686)

Motivation

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Nextstrain (https://nextstrain.org/) is a system for promoting the rapid sharing of virus data, including for influenza and SARS-CoV-2 viruses. It assigns identifiers for individual virus clades. It is complementary to systems such as PANGOLIN and GISAID. -- The Anome (talk) 10:02, 27 November 2021 (UTC)[reply]

Discussion

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WikiProject Taxonomy has more than 50 participants and couldn't be pinged. Please post on the WikiProject's talk page instead. This would be very useful right now, as tracking SARS-Cov-2 variants is a live subject right now; this can also be extended to tracking other infectious virus clades, per the Nextstrain mission statement. -- The Anome (talk) 10:02, 27 November 2021 (UTC)[reply]

Notified participants of WikiProject Medicine Since no-one in the Taxonomy group has yet commented here, I thought I'd bring this to the attention of the Medicine WikiProject. Any comments very welcome. -- The Anome (talk) 00:22, 29 November 2021 (UTC)[reply]

I think it's better use an external identifier with this formatter URL: https://nextstrain.org/groups/neherlab/ncov/21I.Delta Germartin1 (talk) 23:08, 3 December 2021 (UTC)[reply]

 Weak oppose From the examples it seems the property currently only includes the last part of groups/neherlab/ncov/21I.Delta, so it seems specific to something called "neherlab" and COVID-19, not a general property for viruses. --Haansn08 (talk) 02:31, 13 December 2021 (UTC)[reply]

TiagoLubiana 01:35, 16 March 2020 Daniel Mietchen 01:42, 16 March 2020 (UTC)[reply]
Jodi.a.schneider 02:45, 16 March 2020 (UTC)[reply]
Chchowmein 02:45, 16 March 2020 (UTC)[reply]
Dhx1 03:38, 16 March 2020 (UTC)[reply]
Konrad Foerstner 06:02, 16 March 2020 (UTC)[reply]
Netha Hussain 06:19, 16 March 2020 (UTC)[reply]
Bodhisattwa 06:56, 16 March 2020 (UTC)[reply]
Neo-Jay 07:04, 16 March 2020 (UTC)[reply]
John Samuel 07:31, 16 March 2020 (UTC)[reply]
KlaudiuMihaila 07:53, 16 March 2020 (UTC)[reply]
Salgo60 09:11, 16 March 2020 (UTC)[reply]
Andrawaag 10:12, 16 March 2020 (UTC)[reply]
Whidou 10:16, 16 March 2020 (UTC)[reply]
Blue Rasberry 15:07, 16 March 2020 (UTC)[reply]
TJMSmith 16:15, 16 March 2020 (UTC)[reply]
Egon Willighagen 16:49, 16 March 2020 (UTC)[reply]
Nehaoua 20:32, 16 March 2020 (UTC)[reply]
Andy Mabbett (UTC)
Peter Murray-Rust 00:00, 17 March 2020 (UTC)[reply]
Kasyap 02:45, 17 March 2020 (UTC)[reply]
Denny 16:21, 17 March 2020 (UTC)[reply]
Kwj2772 16:56, 17 March 2020 (UTC)[reply]
Joalpe 22:47, 17 March 2020 (UTC)[reply]
Finn Årup Nielsen fnielsen) 10:59, 18 March 2020 (UTC)[reply]
Skim 11:45, 18 March 2020 (UTC)[reply]
SCIdude 15:15, 18 March 2020 (UTC)[reply]
Evolution and evolvability 01:23, 20 March 2020 (UTC)[reply]
Susanna Ånäs (Susannaanas) 07:05, 20 March 2020 (UTC)[reply]
Mlemusrojas 15:30, 20 March 2020 (UTC)[reply]
Yupik 20:23, 20 March 2020 (UTC)[reply]
Csisc 23:05, 20 March 2020 (UTC)[reply]
OAnick 10:26, 21 March 2020 (UTC)[reply]
Gnoeee 12:28, 21 March 2020 (UTC)[reply]
Jjkoehorst 14:27, 21 March 2020 (UTC)[reply]
So9q 08:58, 22 March 2020 (UTC)[reply]
Nandana 14:58, 23 March 2020 (UTC)[reply]
Addshore 15:56, 23 March 2020 (UTC)[reply]
Librarian lena 18:19, 24 March 2020 (UTC)[reply]
Jelabra 19:19, 24 March 2020 (UTC)[reply]
AlexanderPico 23:34, 27 March 2020 (UTC)[reply]
Higa4 02:51, 29 March 2020 (UTC)[reply]
JoranL 19:56, 29 March 2020 (UTC)[reply]
Alejgh 11:04, 1 April 2020 (UTC)[reply]
Will (Wiki Ed)) 17:36, 1 April 2020 (UTC)[reply]
Ranjithsiji 04:47, 2 April 2020 (UTC)[reply]
AntoineLogean 07:35, 2 April 2020 (UTC)[reply]
Hannolans 17:22, 2 April 2020 (UTC)[reply]
Farmbrough 21:15, 3 April 2020 (UTC)[reply]
Ecritures 21:26, 3 April 2020 (UTC)[reply]

Notified participants of WikiProject COVID-19 TiagoLubiana (talk) 17:01, 21 December 2021 (UTC)[reply]

 Comment as property creator: @The Anome, Haansn08, TiagoLubiana: no activity for almost a year on this page. What should we do? if there is still no activity nor consensus, this property will ultimately be declined. Cheers, VIGNERON (talk) 08:52, 4 September 2022 (UTC)[reply]

I think we need an official policy on property proposal deprecation; e.g. no activity after 6 months it goes to backlog and can be reproposed if still needed (and discussion started from scratch with a link to the archived old discussion). The same could happen if, e.g. 1 year has passed and no consesus was reached. For this one, I think it should be archived and reproposed if needed. TiagoLubiana (talk) 14:03, 7 September 2022 (UTC)

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