A census of human transcription factors: function, expression and evolution (Q29622841)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19274049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

title

A census of human transcription factors: function, expression and evolution (English)

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19274049

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19274049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19274049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

Sarah Teichmann

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19274049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

2

Sarah K Kummerfeld

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19274049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

author name string

Nicholas M Luscombe

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19274049%20AND%20SRC:MED&resulttype=core&format=json

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19274049

23 January 2020

language of work or name

1 reference

30 April 2017

publication date

1 April 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19274049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

published in

Nature Reviews Genetics

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19274049

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19274049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

volume

10

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19274049

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19274049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

issue

4

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19274049

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19274049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

page(s)

252-263

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19274049%20AND%20SRC:MED&resulttype=core&format=json

publication type of scholarly work

23 January 2020

review article

1 reference

Serial regulation of transcriptional regulators in the yeast cell cycle

cites work

1 reference

FoxOs at the crossroads of cellular metabolism, differentiation, and transformation

31 March 2020

1 reference

E2A proteins are required for proper B cell development and initiation of immunoglobulin gene rearrangements

31 March 2020

1 reference

Regulation of transcription by proteins that control the cell cycle

31 March 2020

1 reference

Structural and functional properties of genes involved in human cancer

31 March 2020

1 reference

Online Mendelian Inheritance in Man (OMIM) as a knowledgebase for human developmental disorders.

31 March 2020

1 reference

Natural selection on protein-coding genes in the human genome

31 March 2020

1 reference

Patterns of evolutionary constraints on genes in humans

31 March 2020

1 reference

Functional protein divergence in the evolution of Homo sapiens

31 March 2020

1 reference

Scaling laws in the functional content of genomes

31 March 2020

1 reference

Protein family expansions and biological complexity

31 March 2020

1 reference

31 March 2020

1 reference

Transcription regulation and animal diversity

31 March 2020

1 reference

Orchestrated response: a symphony of transcription factors for gene control

31 March 2020

1 reference

DBD--taxonomically broad transcription factor predictions: new content and functionality

31 March 2020

1 reference

The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12.

31 March 2020

1 reference

Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes--a genomic approach

31 March 2020

1 reference

FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors

31 March 2020

1 reference

SGD: Saccharomyces Genome Database

31 March 2020

1 reference

A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks

31 March 2020

1 reference

FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster

31 March 2020

1 reference

Mouse brain organization revealed through direct genome-scale TF expression analysis

31 March 2020

1 reference

PlnTFDB: an integrative plant transcription factor database

31 March 2020

1 reference

Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes

31 March 2020

1 reference

Initial sequencing and analysis of the human genome

31 March 2020

1 reference

The Sequence of the Human Genome

31 March 2020

1 reference

Gene ontology: tool for the unification of biology

31 March 2020

1 reference

An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression

31 March 2020

1 reference

Transcription factor expression in lipopolysaccharide-activated peripheral-blood-derived mononuclear cells

31 March 2020

1 reference

The International Protein Index: an integrated database for proteomics experiments

31 March 2020

1 reference

31 March 2020

1 reference

TRANSFAC: an integrated system for gene expression regulation

31 March 2020

1 reference

Disruption of a new forkhead/winged-helix protein, scurfin, results in the fatal lymphoproliferative disorder of the scurfy mouse

31 March 2020

1 reference

X-linked neonatal diabetes mellitus, enteropathy and endocrinopathy syndrome is the human equivalent of mouse scurfy

31 March 2020

1 reference

Control of regulatory T cell development by the transcription factor Foxp3

31 March 2020

1 reference

Foxp3 programs the development and function of CD4+CD25+ regulatory T cells

31 March 2020

1 reference

Foxp3 occupancy and regulation of key target genes during T-cell stimulation

31 March 2020

1 reference

Genome-wide analysis of Foxp3 target genes in developing and mature regulatory T cells.

31 March 2020

1 reference

Value of FOXP3 expression in peripheral blood as rejection marker after miniature swine lung transplantation

31 March 2020

1 reference

An overview of the structures of protein-DNA complexes

31 March 2020

1 reference

A gene atlas of the mouse and human protein-encoding transcriptomes

31 March 2020

1 reference

Global analysis of protein expression in yeast

31 March 2020

1 reference

Rationalization of gene regulation by a eukaryotic transcription factor: calculation of regulatory region occupancy from predicted binding affinities

31 March 2020

1 reference

The transcriptional landscape of the yeast genome defined by RNA sequencing

31 March 2020

1 reference

RNA-Seq: a revolutionary tool for transcriptomics

31 March 2020

1 reference

TBX1 is responsible for cardiovascular defects in velo-cardio-facial/DiGeorge syndrome

31 March 2020

1 reference

The zinc finger domain of Tzfp binds to the tbs motif located at the upstream flanking region of the Aie1 (aurora-C) kinase gene

31 March 2020

1 reference

Nkx2-5 pathways and congenital heart disease; loss of ventricular myocyte lineage specification leads to progressive cardiomyopathy and complete heart block

31 March 2020

1 reference

Heterogeneity in binding and gene-expression regulation by HIF-2alpha

31 March 2020

1 reference

The T/ebp null mouse: thyroid-specific enhancer-binding protein is essential for the organogenesis of the thyroid, lung, ventral forebrain, and pituitary

31 March 2020

1 reference

Deletion of the thyroid hormone receptor alpha 1 prevents the structural alterations of the cerebellum induced by hypothyroidism

31 March 2020

1 reference

cDNA cloning and tissue-specific expression of a novel basic helix-loop-helix/PAS factor (Arnt2) with close sequence similarity to the aryl hydrocarbon receptor nuclear translocator (Arnt)

31 March 2020

1 reference

Neuronal migration in the murine rostral migratory stream requires serum response factor

31 March 2020

1 reference

Restricted inactivation of serum response factor to the cardiovascular system

31 March 2020

1 reference

p67SRF is a constitutive nuclear protein implicated in the modulation of genes required throughout the G1 period

31 March 2020

1 reference

Serum response factor is essential for mesoderm formation during mouse embryogenesis

31 March 2020

1 reference

The Rho family GTPases RhoA, Rac1, and CDC42Hs regulate transcriptional activation by SRF

31 March 2020

1 reference

Ternary complex factors: growth factor regulated transcriptional activators

31 March 2020

1 reference

Crystal structure of a ternary SAP-1/SRF/c-fos SRE DNA complex

31 March 2020

1 reference

Serum response factor binding sites differ in three human cell types

31 March 2020

1 reference

Differential usage of signal transduction pathways defines two types of serum response factor target gene

31 March 2020

1 reference

Nuclear factor of activated T cells and serum response factor cooperatively regulate the activity of an alpha-actin intronic enhancer

31 March 2020

1 reference

HERP1 inhibits myocardin-induced vascular smooth muscle cell differentiation by interfering with SRF binding to CArG box

31 March 2020

1 reference

Structural and functional analysis of domains mediating interaction between the bagpipe homologue, Nkx3.1 and serum response factor

31 March 2020

1 reference

One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity

31 March 2020

1 reference

A conserved lysine in the estrogen receptor DNA binding domain regulates ligand activation profiles at AP-1 sites, possibly by controlling interactions with a modulating repressor

31 March 2020

1 reference

The genesis and evolution of homeobox gene clusters

31 March 2020

1 reference

Coding limits on the number of transcription factors

31 March 2020

1 reference

Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity

31 March 2020

1 reference

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

31 March 2020

1 reference

Base sequence discrimination by zinc-finger DNA-binding domains

31 March 2020

1 reference

IRFs: master regulators of signalling by Toll-like receptors and cytosolic pattern-recognition receptors

31 March 2020

1 reference

Conservation of sequence and structure flanking the mouse and human beta-globin loci: the beta-globin genes are embedded within an array of odorant receptor genes

31 March 2020

1 reference

Olfactory receptor gene cluster on human chromosome 17: possible duplication of an ancestral receptor repertoire

31 March 2020

1 reference

Vertebrate homeobox gene nomenclature

31 March 2020

1 reference

Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution

31 March 2020

1 reference

The DNA sequence and biology of human chromosome 19

31 March 2020

1 reference

An insight into the phylogenetic history of HOX linked gene families in vertebrates

31 March 2020

1 reference

KRAB zinc finger proteins: an analysis of the molecular mechanisms governing their increase in numbers and complexity during evolution

31 March 2020

1 reference

A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors

31 March 2020

1 reference

Human heterochromatin proteins form large domains containing KRAB-ZNF genes

31 March 2020

1 reference

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates

31 March 2020

1 reference

Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters

31 March 2020

1 reference

A gene expression map for Caenorhabditis elegans.

31 March 2020

1 reference

The evolution of cell types in animals: emerging principles from molecular studies

31 March 2020

1 reference

Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores

31 March 2020

1 reference

Evolution of function in protein superfamilies, from a structural perspective.

31 March 2020

1 reference

Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins

31 March 2020

1 reference

A cdc5+ homolog of a higher plant, Arabidopsis thaliana

31 March 2020

1 reference

Teleonomic mechanisms in cellular metabolism, growth, and differentiation

31 March 2020

1 reference

Evolution at two levels in humans and chimpanzees

31 March 2020

1 reference

A scan for positively selected genes in the genomes of humans and chimpanzees

31 March 2020

1 reference

A forkhead-domain gene is mutated in a severe speech and language disorder

31 March 2020

1 reference

Molecular evolution of FOXP2, a gene involved in speech and language

31 March 2020

1 reference

Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution.

31 March 2020

1 reference

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

31 March 2020

1 reference

Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees

31 March 2020

1 reference

Expression profiling in primates reveals a rapid evolution of human transcription factors

31 March 2020

1 reference

Structure of the forkhead domain of FOXP2 bound to DNA

31 March 2020

1 reference

Evolvability and hierarchy in rewired bacterial gene networks

31 March 2020

1 reference

Highly consistent patterns for inherited human diseases at the molecular level

31 March 2020

1 reference

Transcription factors as targets for cancer therapy

31 March 2020

1 reference

Transcription factors in disease

31 March 2020

1 reference

31 March 2020

1 reference

Database resources of the National Center for Biotechnology Information

31 March 2020

1 reference

GATA transcription factors directly regulate the Parkinson's disease-linked gene alpha-synuclein

31 March 2020

1 reference

Systematic functional characterization of cis-regulatory motifs in human core promoters

31 March 2020

1 reference

A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity.

31 March 2020

1 reference

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

31 March 2020

1 reference

Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity

31 March 2020

1 reference

GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis

31 March 2020

1 reference

Genome-wide mapping of in vivo protein-DNA interactions

31 March 2020

1 reference

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

31 March 2020

1 reference

An intrinsic mechanism of corticogenesis from embryonic stem cells

31 March 2020

1 reference

A model for gene evolution of the ets-1/ets-2 transcription factors based on structural and functional homologies

31 March 2020

1 reference

https://pubmed.ncbi.nlm.nih.gov/19274049

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

InterPro: the integrative protein signature database

1 reference

https://pubmed.ncbi.nlm.nih.gov/19274049

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

ETS-1 and ETS-2 are upregulated in a transgenic mouse model of pigmented ocular neoplasm.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19274049

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19274049

30 April 2017

Consolidated OpenCitations Corpus – April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19274049%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

23 January 2020

1047820135

0 references

1 reference

Consolidated OpenCitations Corpus – April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19274049

3 references

30 April 2017

Consolidated OpenCitations Corpus – April 2017