HITS-CLIP yields genome-wide insights into brain alternative RNA processing (Q24648963)

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Robert B. Darnell

object named as

Robert B Darnell

12

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author name string

Donny D Licatalosi

1

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Aldo Mele

2

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John J Fak

3

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Melis Kayikci

5

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Sung Wook Chi

6

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Anthony C Schweitzer

8

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John E Blume

9

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Xuning Wang

10

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Jennifer C Darnell

RNA binding activity of the recessive parkinsonism protein DJ-1 supports involvement in multiple cellular pathways

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publication date

27 November 2008

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language of work or name

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456

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issue

7221

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page(s)

464-9

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cites work

1 reference

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Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

7 April 2017

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3' end mRNA processing: molecular mechanisms and implications for health and disease

7 April 2017

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The search for alternative splicing regulators: new approaches offer a path to a splicing code

7 April 2017

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Discovery of tissue-specific exons using comprehensive human exon microarrays

7 April 2017

1 reference

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Nova regulates GABA(A) receptor gamma2 alternative splicing via a distal downstream UCAU-rich intronic splicing enhancer

7 April 2017

1 reference

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Long-range heterogeneity at the 3' ends of human mRNAs

7 April 2017

1 reference

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hnRNP F influences binding of a 64-kilodalton subunit of cleavage stimulation factor to mRNA precursors in mouse B cells

7 April 2017

1 reference

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Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein

7 April 2017

1 reference

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The onconeural antigen Nova-1 is a neuron-specific RNA-binding protein, the activity of which is inhibited by paraneoplastic antibodies

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

Nova, the paraneoplastic Ri antigen, is homologous to an RNA-binding protein and is specifically expressed in the developing motor system

7 April 2017

1 reference

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Sequence-specific RNA binding by a Nova KH domain: implications for paraneoplastic disease and the fragile X syndrome

7 April 2017

1 reference

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CLIP: a method for identifying protein-RNA interaction sites in living cells

7 April 2017

1 reference

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Evidence for reassociation of RNA-binding proteins after cell lysis: implications for the interpretation of immunoprecipitation analyses

7 April 2017

1 reference

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Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays

7 April 2017

1 reference

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CLIP identifies Nova-regulated RNA networks in the brain

7 April 2017

1 reference

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A brain-enriched polypyrimidine tract-binding protein antagonizes the ability of Nova to regulate neuron-specific alternative splicing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

The neuronal RNA-binding protein Nova-2 is implicated as the autoantigen targeted in POMA patients with dementia

7 April 2017

1 reference

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The polyadenylation factor CstF-64 regulates alternative processing of IgM heavy chain pre-mRNA during B cell differentiation

7 April 2017

1 reference

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Production of a novel neuropeptide encoded by the calcitonin gene via tissue-specific RNA processing

7 April 2017

1 reference

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Integrating mRNA processing with transcription

7 April 2017

1 reference

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Nova-1 regulates neuron-specific alternative splicing and is essential for neuronal viability

7 April 2017

1 reference

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Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis

7 April 2017

1 reference

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An extensive network of coupling among gene expression machines

7 April 2017

1 reference

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RNA regulons: coordination of post-transcriptional events

7 April 2017

1 reference

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Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

Global analysis of mRNA splicing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

Genome-wide analysis of alternative pre-mRNA splicing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

Splicing in disease: disruption of the splicing code and the decoding machinery

28 September 2017

1 reference

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Muscleblind-like 1 interacts with RNA hairpins in splicing target and pathogenic RNAs

28 September 2017

1 reference

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Developing global insight into RNA regulation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

Alternative splicing: new insights from global analyses

28 September 2017

1 reference

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Drosophila Sex-lethal protein mediates polyadenylation switching in the female germline

28 September 2017

1 reference

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FMRP RNA targets: identification and validation

28 September 2017

1 reference

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Nova regulates brain-specific splicing to shape the synapse

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

Nova autoregulation reveals dual functions in neuronal splicing

28 September 2017

1 reference

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Alternative poly(A) site selection in complex transcription units: means to an end?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

Two mRNAs can be produced from a single immunoglobulin mu gene by alternative RNA processing pathways

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

The intervening sequence RNA of Tetrahymena is an enzyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

On the origin of RNA splicing and introns

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

An RNA map predicting Nova-dependent splicing regulation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

Biased alternative polyadenylation in human tissues

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

5' splice site mutations in tau associated with the inherited dementia FTDP-17 affect a stem-loop structure that regulates alternative splicing of exon 10.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

The 'last ribo-organism' was no breakthrough

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2597294

Co-chairman's remarks: the RNA world: before and after

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18978773

12 December 2020

inferred from PubMed ID database lookup

The multifunctional RNA-binding protein hnRNP A1 is required for processing of miR-18a

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18978773

12 December 2020

inferred from PubMed ID database lookup

Origin of life: The RNA world

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE07488

7 January 2021

inferred from DOI database lookup

Alternative isoform regulation in human tissue transcriptomes

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE07488

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NATURE07488

1 reference

Dimensions Publication ID

1010813801

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1 reference

1 reference

PubMed publication ID

18978773

1 reference