GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses (Q24530553)

3 July 2017

title

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses (English)

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3 July 2017

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John Besemer

1

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3 July 2017

Mark Borodovsky

series ordinal

2

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3 July 2017

language of work or name

English

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publication date

1 July 2005

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3 July 2017

published in

Nucleic Acids Research

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3 July 2017

volume

33

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3 July 2017

issue

Web Server issue

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3 July 2017

page(s)

W451-4

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GeneMark.hmm: new solutions for gene finding

3 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

Basic local alignment search tool

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

Improving gene annotation of complete viral genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

A novel genetic island of meningitic Escherichia coli K1 containing the ibeA invasion gene (GimA): functional annotation and carbon-source-regulated invasion of human brain microvascular endothelial cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

Heuristic approach to deriving models for gene finding

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

cag, a pathogenicity island of Helicobacter pylori, encodes type I-specific and disease-associated virulence factors

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

Detection of new genes in a bacterial genome using Markov models for three gene classes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

How to interpret an anonymous bacterial genome: machine learning approach to gene identification.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160247

Leaderless transcripts of the crenarchaeal hyperthermophile Pyrobaculum aerophilum

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15980510

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI487

1 reference

3 July 2017

DBLP publication ID

journals/nar/BesemerB05

1 reference

DBLP Dataset 2021-01-02

release_4pq3dxg5vra3fl3cgiq6hzhfbq

28 January 2021

Fatcat ID

0 references

OpenCitations bibliographic resource ID

90102

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

90102

1 reference