CLSC 2429-90L Lecture Syllabus Summer II 2023 04252023-1
CLSC 2429-90L Lecture Syllabus Summer II 2023 04252023-1
CLSC 2429-90L Lecture Syllabus Summer II 2023 04252023-1
SYLLABUS
Summer II 2023
Subject to any new Texas legislative mandate changes.
2. Course Information
3. Instructor Information
8. Assessment of Learning
Course Information
Lecture (CLSC 2429-90L) and (CLSC 2429-A)
Course Modality:
Online Asynchronous Courses (OASYNC) – applies to both lecture and lab
Instructor Information:
Maria Teresa Aguirre, MS, MT (ASCP)
About Me: I am currently a Clinical Associate Professor in the Medical Lab Science
Program which is taught on the Edinburg campus and have been employed with the
university since 2009. If you don't know about Medical Lab, this is a one-and-a-
half-year program that awards a B.S. degree in Medical Lab Science. This is a
medical profession that performs testing on human specimens such as blood,
serum, urine, stool, etc. for the purposes of diagnoses and treatment. When you
go to the doctor and get your blood drawn, Medical Lab Scientists will be
performing and interpreting the results of that testing. In doctors' offices and
sometimes, in clinics, because their testing is minimal or fairly easy, they can
employ other than MLS to perform that testing, but the director of the lab must be
a MLS. There are four major departments in MLS. These include hematology (the
study of blood cells), immunohematology (blood-banking which involves cross-
matching blood and blood products), clinical chemistry (where blood levels of many
blood constituents such as electrolytes, hormones, etc. are tested), and
microbiology where patient samples such as blood, urine, feces, etc. are received
and cultured and any pathogenic microorganisms are identified. Medical Lab
Scientists are the definitive experts in medical microbiology.
My work experience includes testing in a clinic lab, a reference lab, and a research
lab. I received the bulk of my experience in the reference lab setting where I
supervised a day shift and worked in all of the departments, including
microbiology. I would spearhead new testing and review and approve of
questionable results from the night shift. I would also work with doctors and
nursing staff that were our clients when they had questions about results. My work
in the research lab involved a study of breast cancer among women of Mexican
American descent, and in this study, I developed a method for detecting
phytoestrogens in human urine using high performance liquid chromatography
coupled with photo-diode array. This was a long and complicated process, but
ultimately, I was able to validate my method of which a patent was issued on May
31, 2022. So far, my work has been very rewarding, since I enjoy teaching this
subject and applying what I have learned and experienced. I have completed two
years towards a doctorate in epidemiology at the UT Health Science Center
Houston.
On a personal note, I am married and have one daughter and a son-in-law and two
grandchildren. We have 1 dog, Gina, whom we just love. I love to garden and
paint and decorate and cook. I also love reading anything related to gardening and
decorating, especially English gardening. I came from a family of 9 children, and I
grew up primarily here in the valley. I love being quiet, being outdoors, spending
time with my family, and watching a good movie every once in a while.
When I lecture, I divide the lecture into smaller sections. After each section, I ask
that you review and discuss the material. In this way, I am able to determine if
you have sufficient understanding of the material covered before we proceed. I
have determined that this type of teaching style leads to better retention and
understanding. By the time you are done with the course, you will have acquired a
great amount of knowledge in medical microbiology, in a short amount of time.
“The happiness of life depends on the quality of your thoughts.” (Marcus Aurelius).
The Course Learning Objectives and the Outcomes for the Course are aligned
with the Course Description, and all assignments and exams are thusly aligned
as evidenced below.
Course Assignments & Learning Objectives
Course Learning Objectives (CLO)
1. Describe the requirements for computer hardware and software as stated in the
syllabus.
2. Describe the manner in which proctored exams are taken using a Webcam and
microphone.
4. Describe how Respondus works and what actions constitute flag violations.
5. Take the Respondus Syllabus Assessment without any flag violations and pass
the assessment with at least 80% accuracy. This includes passing the cognitive
part of assessment with at least 70% accuracy and passing the Respondus part
of the assessment with 100% accuracy.
Chapter 1 (CLO 1)
Chapter 14 (CLO 7)
Chapter 15 (CLO 7)
Compare and contrast the general aspects of humoral immunity and cell-
15.01
mediated immunity.
Compare and contrast the roles of lymphatic vessels, the various
15.02
secondary lymphoid organs, and primary lymphoid organs.
Define the terms antigen, immunogen, T-dependent antigen, T-
15.03
independent antigen, antigenic and epitope.
15.04 Diagram an antibody, labeling the various functional regions.
15.05 Describe six protective outcomes of antibody-antigen binding.
15.06 Compare and contrast the five classes of immunoglobulins.
Outline the process of clonal selection and expansion. Early on,
15.07 immunologists recognized that the immune system is capable of making
a seemingly infinite array of antibody specificities.
15.08 Describe the role of TH cells in B-cell activation.
15.09 Compare and contrast the primary and the secondary responses.
Compare and contrast the response to T-dependent antigens and T-
15.10
independent antigens.
15.11 Describe the importance of T-cell receptors and CD markers.
15.12 Describe the role of dendritic cells in T-cell activation.
Compare and contrast TH and TC cells with respect to antigen
15.13
recognition and the response to antigen.
15.14 Describe two distinct protective roles of NK cells.
Describe the roles of gene rearrangement, imprecise joining, and
15.15
combinatorial associations in the generation of diversity.
15.16 Describe positive and negative selection of lymphocytes.
Chapter 16 (CLO 7)
Chapter 17 (CLO 8)
Chapter 18 (CLO 8)
Chapter 19 (CLO 9)
Define the terms commonly used to describe the epidemiology of
19.01
disease.
Explain why epidemiologists are most concerned with the rate of
19.02
disease rather than the number of cases.
Describe movement of a pathogen from its reservoir to a host, and
19.03
back to its reservoir or to another host.
Explain how characteristics of a pathogen or of a host can influence the
19.04
epidemiology of a disease.
Compare and contrast descriptive studies, analytical studies, and
19.05
experimental studies.
Describe how a common-source epidemic can be distinguished from a
19.06
propagated epidemic.
Compare and contrast the roles of the Centers for Disease Control and
19.07 Prevention, state public health departments, and the World Health
Organization.
19.08 Explain the value of maintaining a current list of notifiable diseases.
19.09 Describe the conditions that may allow eradication of a disease.
Explain two ways in which microbial evolution can lead to emergence of
19.10
disease.
Describe how human behavior can contribute to the emergence and
19.11
reemergence of disease.
19.12 Explain how climate can influence disease emergence.
Describe four reservoirs of infectious agents in healthcare settings and
19.13
three mechanisms by which the agents can be transferred to patients.
19.14 Describe the role of Infection Control Committees in preventing
nosocomial infections.
20.4. Describe the b-lactam antibiotics and other antimicrobials that inhibit cell wall
synthesis.
20.5. Describe the antimicrobial medications that interfere with the following:
protein synthesis, nucleic acid synthesis, metabolic pathways, or cell membrane
integrity.
20.7. Describe how the minimum inhibitory concentration (MIC) and the minimum
bactericidal concentration (MBC) are determined.
20.8. Compare and contrast the Kirby-Bauer disc diffusion test with commercial
modifications of antimicrobial susceptibility testing.
20.12. Describe how the emergence and spread of antimicrobial resistance can be
slowed.
20.13. Describe the antiviral medications that interfere with the following: viral
uncoating, nucleic acid synthesis, genome integration, or assembly and release of
viral particles.
20.14. Describe the antifungal medications that interfere with fungal cytoplasmic
membrane synthesis and function cell wall synthesis, cell division, or nucleic acid
synthesis.
21.1. Outline the functions of the upper and lower respiratory tracts.
21.2. List the parts of the respiratory system that are normally microbe-free.
21.4. List the parts of the upper respiratory system commonly infected by
Streptococcus pneumoniae and Haemophilus influenzae.
21.9. Describe antigenic drift and antigenic shift and discuss how they affect the
epidemiology of influenza.
Upon completion of the laboratory and lecture sections of this course, the student
should be able to:
Module 2
4. Explain the process of using sterile techniques to streak and isolate organisms.
(CLO 1, 5)
Module 3
13. Identify the steps and principle to the Gram stain procedure. (CLO 3, 6)
14. State the advantage of the Gram-stain over a simple stain. (CLO 3, 6)
16. Name two genera of bacteria that are acid-fast and two diseases caused by acid-
fast bacteria. (CLO 6)
17. Identify two acid fast staining methods commonly used. (CLO 3, 6)
Module 4
19. Explain the importance of the isolating individual colonies from a mixed culture
(CLO 3, 6)
20. Describe and explain the three and four streak methods used for isolation of
microorganisms (CLO 6)
21. Explain which of the four quadrants of a streaked plate isolated colonies are
expected to appear and why (CLO 6)
22. Describe why a Petri plate should not be left open for an extended period. (CLO
6)
25. Describe the different categories of media and their purpose. (CLO 6)
26. List the organisms that grow on the following culture media: blood agar,
chocolate agar, mannitol agar, MacConkey, Hektoen Enteric, (HE) agar, XLD
agar, phenylethyl alcohol agar and Modified Thayer Martin. (CLO 3, 6)
Module 5
29. Explain the meaning of antimicrobial resistance and susceptibility. (CLO 10)
30. Explain why pure cultures are necessary for antimicrobial susceptibility testing.
(CLO 6, 10)
31. Describe what would happen if a mixed culture were used in a susceptibility test.
(CLO 6, 10)
32. State two mechanisms by which bacteria can acquire antibiotic resistant genes.
(CLO 7)
Module 6
37. Evaluate selective media for isolating and differentiating Staphylococcus species.
(CLO 3, 6)
38. List two common skin infections and two systemic infections caused
by Staphylococcus species. (CLO 11)
40. Specify body sites where Staphylococcus species are found as part of the normal
flora. (CLO 3, 11)
44. Complete a case study associated with Staphylococcus infection. (CLO 6, 11)
Module 7
46. Explain the best culture media and atmospheric conditions for cultivating
Streptococci. (CLO 3, 6)
47. Describe normal flora of the upper and lower respiratory tracts. (CLO 11)
Module 8
55. List types of bacteria found as normal flora in the human intestinal tract. (CLO 7,
11)
56. Explain the basis of biochemical and serological tests for the identification
of enteric bacteria. (CLO 6)
57. List the major components of TSI agar and IMViC and explain the basis of the
various test reactions. (CLO 3)
59. Summarize the gram-stain reaction, the biochemical tests and serological tests
for common Enterobacteriaceae causing human disease. (CLO 3, 6)
62. Construct a basic flow chart for processing a stool sample for the identification
of enteric pathogens. (CLO 6)
63. List two genera that are not members of the Enterobacteriaceae group but cause
intestinal disease. (CLO 11)
Module 9
66. Evaluate three clinical case studies and identify the disease-causing agent. (CLO
11)
67. Describe the enteric bacteria that are normal flora of the intestinal tract. (CLO 7,
11)
68. Explain why the preparation of a Gram-stained smear from a stool specimen is
not recommended. (CLO 6)
Module 10
70. Describe three basic cellular structures found in all protozoa. (CLO 1)
71. Identify six major groups of pathogenic protozoa and give an example of each.
(CLO 1)
Assessment of Learning
Grading Policies
The final grade for this course is calculated by percentages in each of the categories
below. These percentage points will be summed up to obtain the Final Grade.
This required text does have an eBook offering. If you would like to explore
this cost-effective resource, please request this option in the bookstore or
visit mheducation.com
Copyright: 2022
ISBN: 978-1-264-34198-6
Copyright: 2019
ISBN: 978-1-260-00218-8
This textbook is not an open educational resource.
Lecture:
Ryman, Adam. (2008, March 7). WBC chases bacteria in real life [Video
file]. Retrieved from https://www.youtube.com/watch?v=JnlULOjUhSQ.
Lab:
TECHNICAL REQUIREMENTS
Computer Requirements
A laptop or desktop is required for this course which has the requirements
described below:
Computer Hardware
To participate in this online course, you should have easy access to a computer less
than 3-years old with a high-speed internet connection via cable modem, LAN or
DSL. To ensure you are using a supported browser and have required plug-ins
please refer to Supported Browsers, Plugins & Operating Systems for Blackboard
Learn from Blackboards resource page.
Software
Google's Chrome(latest version)
Mozilla's Firefox(latest version)
Adobe's Reader plugin (latest version)
Apple's QuickTime plugin (latest version)
Virus Protection
Microsoft Office (latest version; available for free)
Mobile-friendly applications
The course may be accessed through the Blackboard app which can be
downloaded from the Goggle Play store (Android) or the App Store (iOS). You may
view the course syllabus, announcements, course content, grades, and reply to
discussion questions using the app. Please use a laptop or desktop to submit
assignments and to take quizzes and exams using Respondus.
Technical Assistance
If you need technical assistance at any time during the course or to report a
problem with Blackboard you can:
Week 1
July 13, Thursday How to Succeed in this Course, Respondus and Video lesson on how to
Syllabus Lecture and Assessment, Students’ succeed, Power point lesson
Introduction Discussion and assessment, Students’
Introduction
Week 2
July 20, Thursday Quiz 1 Unit 1
Week 3
July 27, Thursday Applications of Immune Responses Chapter 17
Week 4
Begin Unit 3 Chapters 19, 20, 21 Unit 3
Week 5
August 10, Thursday Exam 3 and Discussion Unit 3
Week 6
August 17, Thursday Study Day Study Day
Online Staphylococci
6
Online Enterobacteriaceae
8
Online Parasitology
10
COURSE POLICIES
The students are expected to read all communications from the instructor which
consist mostly of announcements and include comments or corrections on
assignments, etc.
The instructor usually emails a student directly if there was a problem with the
Respondus results or if they have been absent, primarily, but may need to email
the student for other reasons.
If the student does not respond to the instructor within 48 hours, and the instructor
is seeking a response regarding an apparent Respondus flag violation, the instructor
will apply a zero as a grade to the assignment in question until the problem has
been resolved.
Participation consists of keeping up with all assignments in both lecture and lab.
A student is regarded as not participating by the number of missing assignments.
Any student missing half or more of the assignments at any given time in either
lecture or lab is considered as not participating in the course. Any student who has
missed half or more of the assignments by the Drop Date will be dropped from both
lecture and lab.
Students that have not participated in the course as stated above, have not
communicated with the instructor regarding their excessive absence in the course,
and have not yet been dropped will be blocked from Blackboard and will not be
allowed to continue taking exams or complete assignments.
UTRGV’s attendance policy excuses students from attending class if they are
participating in officially sponsored university activities, such as athletics; have
been provided such an accommodation by Student Accessibility Services (SAS); for
observance of religious holy days; or for military service. Students should contact
the instructor in advance of the excused absence and arrange to make up missed
work or examinations.
Students should not request that the instructor grant them extra points,
special allowances or favors because they have a “scholarship” or other
reason they “need” or “must have” a particular grade. They will be reported
to the Office of Students Rights and Responsibilities. This is considered a
request for “unfair advantage to a student” and is considered academic
dishonesty according to University policy (Board of Regents Rules and
Regulations STU 02-100, and UTRGV Academic Integrity Guidelines).
Students who decide to travel during the semester for any reason do so at their
own risk. The deadlines and due dates will not be modified for any reason for any
student. Also, any problems due to connectivity issues related to travel such as
Wifi problems, not using the appropriate hardware and software, etc. will not be
considered.
Any technical issues or any other issues experienced with any assignment should be
addressed to the instructor or Blackboard, if necessary, within the assignment
availability period and at most 24 hours after the assignment closes. Any issues
brought to the instructor’s knowledge after this period will not be considered.
ABSENCES/SICK POLICY
If a student needs to miss class due to illness and other personal reasons,
they should inform the instructor ahead of time or as soon as possible.
The material covered will be available within the weekly modules as stated in
the “Tentative Lecture Schedule” and may be accessed by the student.
In the case of excused absences agreed to by the instructor, the student
should contact the instructor to schedule the make-up of any missed
assignments or if they have any questions regarding the lectures or
assignments missed.
Recorded lectures are also available, and may be provided to the
student, if needed.
The use of classroom recordings is governed by the Federal
Educational Rights and Privacy Act (FERPA), UTRGV’s acceptable-use
policy, and UTRGV HOP Policy STU 02-100 Student Conduct and
Discipline. A recording of class sessions will be kept and stored by
UTRGV, in accordance with FERPA and UTRGV policies. Your instructor
will not share the recordings of your class activities outside of course
participants, which include your fellow students, teaching assistants, or
graduate assistants, and any guest faculty or community-based
learning partners with whom we may engage during a class session.
You may not share recordings outside of this course. As referenced in
UTRGV HOP Policy STU 02-100 Student Conduct and Discipline, doing
so may result in disciplinary action.
COURSE DROPS
According to UTRGV policy, students may drop any class without penalty
earning a grade of DR (drop) until the official drop date. Following that date,
students must be assigned a letter grade and can no longer drop the class.
Students considering dropping the class should be aware of the “3-peat rule”
and the “6-drop” rule so they can recognize how dropped classes may affect
their academic success. The 6-drop rule refers to Texas law that dictates
undergraduate students may not drop more than six courses during their
undergraduate career. Courses dropped at other Texas public higher
education institutions will count toward the six-course drop limit. The 3-peat
rule refers to additional fees charged to students who take the same class for
the third time.
ACADEMIC INTEGRITY
Members of the UTRGV community uphold the Vaquero Honor Code’s shared values of
honesty, integrity and mutual respect in our interactions and relationships. In this regard,
academic integrity is fundamental in our actions, as any act of dishonesty conflicts as much with
academic achievement as with the values of honesty and integrity. The Writing Center is an
excellent resource to assist in learning about and avoiding plagiarism in writing. Violations of
academic integrity include, but are not limited to: cheating, plagiarism (including self-plagiarism),
and collusion; submission for credit of any work or materials that are attributable in whole or in
part to another person; taking an examination for another person; any act designed to give
unfair advantage to a student; or the attempt to commit such acts (Board of Regents Rules and
Regulations, STU 02-100, and UTRGV Academic Integrity Guidelines). All violations of
Academic Integrity will be reported to Student Rights and Responsibilities through
Vaqueros Report It.
Your enrollment in this course requires that you use Respondus Lockdown Browser
and Respondus Monitor for online assessment proctoring. LockDown Browser is a
custom browser that locks down the testing environment within Blackboard and
replaces regular browsers such as Chrome and Firefox. Respondus Monitor requires
you to have a webcam and microphone as it will record you while taking your
assessment. YOUR ACTIVITIES ARE RECORDED WHILE YOU ARE LOGGED
INTO OR TAKING YOUR ASSESSMENT(S). THE RECORDINGS SERVE AS A
PROCTOR AND WILL BE REVIEWED AND USED IN AN EFFORT TO MAINTAIN
ACADEMIC INTEGRITY. You can find more detailed information on Lockdown
Browser and Monitor at UTRGV.edu/online.
If you have problems with proctored exams and quizzes, refer to the
troubleshooting procedure in the student guidelines posted in Blackboard.
Suspicious eye movements - The software also tracks eye movement and flags
recordings as suspicious if the student looks away from the screen. Wearing
sunglasses also confuses the program and are usually not needed indoors, so
sunglasses should not be worn.
Complying with Respondus policies - Any student who is not able to comply
with these guidelines and the use of the proctoring software will be given a zero for
this course and reported to the Office of Students Rights and Responsibilities.
Students seeking academic help in their studies can use university resources in addition to an
instructor’s office hours. University Resources include the Advising Center, Career Center,
Counseling Center, Learning Center, and Writing Center. These centers provide services such
as tutoring, writing help, counseling services, critical thinking, study skills, degree planning, and
connections student employment (through Handshake and HR Student Employment). In
addition, services, such as the Food Pantry are also provided. Locations are listed below.
Financial Need
Students who demonstrate financial need have a variety of options when it comes to
paying for college costs, such as scholarships, grants, loans and work-study. Students
should visit the Student Services Center (U Central) for additional information. U Central
is located in BMAIN 1.100 (Brownsville) or ESSBL 1.145 (Edinburg) or can be reached
by email ([email protected]) or telephone: (956) 882-4026. In addition to financial aid,
U Central can assist students with registration and admissions.
Blackboard Support
If you need assistance with course technology at any time, please contact the Center for Online
Learning and Teaching Technology (COLTT).
Support
Submit a Support Case via our Ask COLTT Portal
Tickets
Online
Chat with a Support Specialist online.
Support
24/7 Need Blackboard assistance after hours? You can call our main
Support office numbers, (956)-882-6792 or (956)-665-5327, to speak with a
support representative.
University Policy Statements
We care about creating a safe and supportive learning environment for all students. The
University policy statements below are intended to create transparency for your rights and
responsibilities as students. We each contribute to ensuring a safe and positive environment
through our actions and conduct, and students are encouraged to advocate for their needs.
e-mail [email protected]
DEAN OF STUDENTS
The Dean of Students office assists students when they experience a challenge with an
administrative process, unexpected situation, such as an illness, accident, or family situation,
and aids in resolving complaints. Additionally, the office facilitates student academic related
requests for religious accommodations, support students formerly in foster care, helps to
advocate on behalf of students and inform them about their rights and responsibilities, and
serves as a resource and support for faculty and campus departments.
Vaqueros Report It allows students, staff, and faculty a way to report concern about the well-
being of a student, seek assistance in resolving a complaint, or report allegations of behaviors
contrary to community standards or campus policies. The Dean of Students can be reached by
email ([email protected]), phone (956-665-2260), or by visiting one of the following office
locations: Cavalry (BCAVL) 204 or University Center (EUCTR 323).