🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Nanopore sequence read simulator

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Technology agnostic long read analysis pipeline for transcriptomes

Building classifiers using cancer transcriptomes across 33 different cancer-types

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

The START App: R Shiny Transcriptome Analysis Resource Tool

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Merging, Annotation, Validation, and Illustration of Structural variants

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

A Python library to visualize and analyze long-read transcriptomes

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

De novo clustering of long transcript reads into genes

Genome Annotation Without Nightmares

Evolutionary Transcriptomics with R

de novo assembly of RNA-seq data using ABySS

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes

Demultiplexing and debarcoding tool designed for LR-Split-seq data.

Annotated Genome Optimization Using Transcriptome Information