Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Personal Cancer Genome Reporter (PCGR)

Detect and visualize target mutations by scanning FastQ files directly

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Dockstore implementation of CGP core WGS analysis

Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes

This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)

VEP -ensembl 105.0 em um VCF somático

Empirical Bayes somatic variant calling

Assortment of VCF processing scripts

PhylogicNDT dockcer for clonal evolution analysis

Mutation in the tropical tree canopy