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Status: Open.

#114 In fraenkel-lab/OmicsIntegrator2;

· agitter opened on Jul 30, 2022

Node names missing in dataframe from get_networkx_graph_as_dataframe_of_edges

Status: Open.

#113 In fraenkel-lab/OmicsIntegrator2;

· agitter opened on Apr 1, 2021

Document parameter gamma (self.params.g) in the code, and re-generate docs

Status: Open.

#112 In fraenkel-lab/OmicsIntegrator2;

· alexlenail opened on Mar 25, 2021

Numeric arguments in __main__.py stored as list

Status: Open.

#111 In fraenkel-lab/OmicsIntegrator2;

· agitter opened on Mar 25, 2021

TypeError: pcst_fast(): incompatible function arguments

Status: Open.

#110 In fraenkel-lab/OmicsIntegrator2;

· agitter opened on Mar 25, 2021

Initialization parameters not used in grid search

Status: Open.

#108 In fraenkel-lab/OmicsIntegrator2;

· iamjli opened on Feb 23, 2021

Improve runtime of PCSF by unrooting PCST

difficulty: intermediate

Status: Open.

#98 In fraenkel-lab/OmicsIntegrator2;

· iamjli opened on Feb 22, 2019

Make it possible to root PCSF at a particular node

difficulty: easy

Status: Open.

#89 In fraenkel-lab/OmicsIntegrator2;

· alexlenail opened on Jun 20, 2018

Move to python3.6 f-strings consistently across codebase

difficulty: easy

Status: Open.

#88 In fraenkel-lab/OmicsIntegrator2;

· alexlenail opened on Jun 19, 2018

Finish tests for OmicsIntegrator "Results" methods

difficulty: intermediate

Status: Open.

#87 In fraenkel-lab/OmicsIntegrator2;

· alexlenail opened on Jun 19, 2018

Ernest: Avoid parameter selection by randomize & merge

difficulty: hard

Status: Open.

#56 In fraenkel-lab/OmicsIntegrator2;

· alexlenail opened on Oct 19, 2017

Ernest: Ranking subnetworks

difficulty: intermediate

Status: Open.

#55 In fraenkel-lab/OmicsIntegrator2;

· alexlenail opened on Oct 19, 2017