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1. single-cell-bioinformatics single-cell-bioinformatics Public

   Forked from YeoLab/single-cell-bioinformatics

   Course material in notebook format for learning about single cell bioinformatics methods

   Jupyter Notebook

2. single-cell-tutorial single-cell-tutorial Public

   Forked from theislab/single-cell-tutorial

   Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

   Jupyter Notebook

3. pySCENIC pySCENIC Public

   Forked from aertslab/pySCENIC

   pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…

   Python

4. single-cell-pseudotime single-cell-pseudotime Public

   Forked from agitter/single-cell-pseudotime

   An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

5. ipynb-lamanno2016 ipynb-lamanno2016 Public

   Forked from linnarsson-lab/ipynb-lamanno2016

   Notebook and examples related to La Manno and Gyllborg et al. 2016

   Jupyter Notebook

6. vsn-pipelines vsn-pipelines Public

   Forked from DanieFD/vsn-pipelines

   A repository of pipelines for single-cell data in Nextflow DSL2

   Nextflow