Point pattern analysis (PPA) is the study of the spatial arrangements of points in (usually 2-dimensional) space. The simplest formulation is a set X = {x∈D} where D, which can be called the 'study region,' is a subset of Rn, a n-dimensionalEuclidean space.
Description
The easiest way to visualize a 2-D point pattern is a map of the locations, which is simply a scatterplot but with the provision that the axes are equally scaled. If D is not the boundary of the map then it should also be indicated. An empirical definition of D would be the convex hull of the points, or at least their bounding box, a matrix of the ranges of the coordinates. Another straightforward way to visualize the points is a 2D histogram (sometimes called a quadrats) that bins the points into rectangular regions. A benefit of quadrat analysis is that it forces the analysis to take into account possible scales within which statistically significant inhomogeneities may be occurring.
Modeling
The null model for point patterns is complete spatial randomness (CSR), modeled as a Poisson process in Rn, which implies that the number of points in any arbitrary region A in D will be proportional to the area or volume of A. Exploring models is generally iterative: if CSR is accepted not much more can be said, but if rejected, there are two avenues. First, one must decide which models are worth exploring, such as investigations of clustering, density, trends, etc. And for each of these models there are appropriate scale ranges, from the finest, which essentially mirrors the point pattern, to the coarsest, which aggregates D. It is generally interesting to explore a range of scales within these limits.
A particularly robust model of clustered point patterns is diffusion, which can also be thought of as the trajectory of a point doing a random walk.
Let (x1, x2, …, xn) be an independent and identically distributed sample drawn from some distribution with an unknown densityƒ. We are interested in estimating the shape of this function ƒ. Its kernel density estimator is
where K(•) is the kernel — a non-negative function that integrates to one and has mean zero — and h > 0 is a smoothing parameter called the bandwidth. A kernel with subscript h is called the scaled kernel and defined as Kh(x) = 1/h K(x/h). Intuitively one wants to choose h as small as the data allow, however there is always a trade-off between the bias of the estimator and its variance; more on the choice of bandwidth below.
In probability and statistics,
density estimation is the construction of an estimate, based on observed data, of an unobservable underlying probability density function. The unobservable density function is thought of as the density according to which a large population is distributed; the data are usually thought of as a random sample from that population.
We will consider records of the incidence of diabetes. The following is quoted verbatim from the data set description:
In this example,
we construct three density estimates for "glu" (plasmaglucose concentration),
one conditional on the presence of diabetes,
the second conditional on the absence of diabetes,
and the third not conditional on diabetes.
The conditional density estimates are then used to construct the probability of diabetes conditional on "glu".
All about Kernel Density Estimation (KDE) in data science.
Fish Icon:
https://www.freepik.com/search?format=search&icon_color=red&last_filter=icon_color&last_value=red&query=fish&type=icon
0:00 Why do KDE?
2:30 Good vs. Bad KDE
5:35 Intuition and Math
15:09 Bandwidth Selection Theory
19:45 Bandwidth Selection in Practice
published: 29 Jan 2024
What is kernel density estimation? And how to build a KDE plot in Python? | Seaborn KDEplot
This seaborn kdeplot video explains both what the kernel density estimation (KDE) is as well as how to make a kde plot within seaborn. After introducing how a KDE plot is built, I demo Python code for both the univariate and bivariate KDE plots with seaborn. I also discuss what kinds of kernel to choose and how to set bandwidth.
00:00 What is KDE?
1:03 How does KDE work?
2:05 Univariate KDEplot code
4:02 What is bandwidth?
5:35 How to read a bivariate KDEplot
6:09 Bivariate KDEplot code
8:34 Conclusion and up next
Github code:
https://github.com/kimfetti/Videos/blob/master/Seaborn/02_KDEplot.ipynb
#seaborn #dataviz
published: 29 Jun 2020
Intro to Kernel Density Estimation
This video gives a brief, graphical introduction to kernel density estimation. Many plots are shown, all created using Python and the KDEpy library (https://github.com/tommyod/KDEpy). A .pdf of the presentation may be found here: https://github.com/tommyod/KDEpy/blob/master/docs/presentation/kde_presentation.pdf
Contents
00:22 - What is kernel density estimation?
01:27 - Kernel functions
03:27 - Bandwidth
04:30 - Silverman's rule of thumb
05:19 - Improved Sheather Jones
06:10 - Weighting the data
07:30 - Bounded domains and reflections
09:18 - Kernel density estimation in higher dimensions
10:02 - The choice of norm
11:11 - Example of 2D kernel density estimation
12:36 - A fast algorithm using linear binning and convolution
15:30 - 2D linear binning
16:18 - KDEpy - software for kernel den...
published: 24 Sep 2018
Kernel Density Estimation
This video is about KDE
published: 04 Oct 2020
Kernel Density Estimation
We do a small tutorial on kernel density estimation (KDE). Mostly for fun, a bit skippable.
Associated Github Commit:
https://github.com/knathanieltucker/bit-of-data-science-and-scikit-learn/blob/master/notebooks/DensityEstimation.ipynb
Associated Scikit Links:
http://scikit-learn.org/stable/modules/density.html
published: 09 Jul 2017
Kernel Density Estimation Explained | Statistics for Data Science
Watch Video to understand the overview of Kernel Density Estimation with an example. And evaluation of Kernel density.
#kerneldensityestimation #kerneldensity #whatiskerneldensityestimation #statisticsfordatascience
DataMites is a global institute for data science, machine learning, python, deep learning, tableau and artificial intelligence training courses. DataMites provides ML expert, Python Developer, AI Engineer, Certified Data Scientist and AI Expert courses accredited by IABAC®.
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published: 30 Nov 2022
Point Pattern Analysis Part 5: Kernel Density Estimation
This presentation provides an introduction to kernel density estimation (KDE) techniques for visualizing event densities in maps.
This video presentation was created as part of a peer-reviewed educational series of Reusable Learning Objects (RLOs) on Spatial Analysis.
The full suite of presentations can be accessed at http://ecolearnit.ifas.ufl.edu/.
For more information on the state-wide and online Geomatics program at the University of Florida, please visit us at http://flrec.ifas.ufl.edu/geomatics/ (Fort Lauderdale campus) or http://sfrc.ifas.ufl.edu/geomatics/ (Gainesville campus).
published: 29 Jan 2016
Kernel Density Estimation (KDE) Part1 - Model Building and Validation
This video is part of an online course, Model Building and Validation. Check out the course here: https://www.udacity.com/course/ud919.
published: 23 Feb 2015
KERNEL DENSITY ESTIMATION (KDE) THEORY || Non Parametric Statistical Modelling || Data Science
#datascience #kerneldensity #nonparametric #statistics #machinelearning
In this video you will learn about the Kernel Density estimation and how it can be used to fit data (in a non parametric way).
Join this channel to get access to perks:
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Cours...
All about Kernel Density Estimation (KDE) in data science.
Fish Icon:
https://www.freepik.com/search?format=search&icon_color=red&last_filter=icon_color&last_v...
All about Kernel Density Estimation (KDE) in data science.
Fish Icon:
https://www.freepik.com/search?format=search&icon_color=red&last_filter=icon_color&last_value=red&query=fish&type=icon
0:00 Why do KDE?
2:30 Good vs. Bad KDE
5:35 Intuition and Math
15:09 Bandwidth Selection Theory
19:45 Bandwidth Selection in Practice
All about Kernel Density Estimation (KDE) in data science.
Fish Icon:
https://www.freepik.com/search?format=search&icon_color=red&last_filter=icon_color&last_value=red&query=fish&type=icon
0:00 Why do KDE?
2:30 Good vs. Bad KDE
5:35 Intuition and Math
15:09 Bandwidth Selection Theory
19:45 Bandwidth Selection in Practice
This seaborn kdeplot video explains both what the kernel density estimation (KDE) is as well as how to make a kde plot within seaborn. After introducing how a ...
This seaborn kdeplot video explains both what the kernel density estimation (KDE) is as well as how to make a kde plot within seaborn. After introducing how a KDE plot is built, I demo Python code for both the univariate and bivariate KDE plots with seaborn. I also discuss what kinds of kernel to choose and how to set bandwidth.
00:00 What is KDE?
1:03 How does KDE work?
2:05 Univariate KDEplot code
4:02 What is bandwidth?
5:35 How to read a bivariate KDEplot
6:09 Bivariate KDEplot code
8:34 Conclusion and up next
Github code:
https://github.com/kimfetti/Videos/blob/master/Seaborn/02_KDEplot.ipynb
#seaborn #dataviz
This seaborn kdeplot video explains both what the kernel density estimation (KDE) is as well as how to make a kde plot within seaborn. After introducing how a KDE plot is built, I demo Python code for both the univariate and bivariate KDE plots with seaborn. I also discuss what kinds of kernel to choose and how to set bandwidth.
00:00 What is KDE?
1:03 How does KDE work?
2:05 Univariate KDEplot code
4:02 What is bandwidth?
5:35 How to read a bivariate KDEplot
6:09 Bivariate KDEplot code
8:34 Conclusion and up next
Github code:
https://github.com/kimfetti/Videos/blob/master/Seaborn/02_KDEplot.ipynb
#seaborn #dataviz
This video gives a brief, graphical introduction to kernel density estimation. Many plots are shown, all created using Python and the KDEpy library (https://git...
This video gives a brief, graphical introduction to kernel density estimation. Many plots are shown, all created using Python and the KDEpy library (https://github.com/tommyod/KDEpy). A .pdf of the presentation may be found here: https://github.com/tommyod/KDEpy/blob/master/docs/presentation/kde_presentation.pdf
Contents
00:22 - What is kernel density estimation?
01:27 - Kernel functions
03:27 - Bandwidth
04:30 - Silverman's rule of thumb
05:19 - Improved Sheather Jones
06:10 - Weighting the data
07:30 - Bounded domains and reflections
09:18 - Kernel density estimation in higher dimensions
10:02 - The choice of norm
11:11 - Example of 2D kernel density estimation
12:36 - A fast algorithm using linear binning and convolution
15:30 - 2D linear binning
16:18 - KDEpy - software for kernel density estimation in Python
16:51 - References
This video gives a brief, graphical introduction to kernel density estimation. Many plots are shown, all created using Python and the KDEpy library (https://github.com/tommyod/KDEpy). A .pdf of the presentation may be found here: https://github.com/tommyod/KDEpy/blob/master/docs/presentation/kde_presentation.pdf
Contents
00:22 - What is kernel density estimation?
01:27 - Kernel functions
03:27 - Bandwidth
04:30 - Silverman's rule of thumb
05:19 - Improved Sheather Jones
06:10 - Weighting the data
07:30 - Bounded domains and reflections
09:18 - Kernel density estimation in higher dimensions
10:02 - The choice of norm
11:11 - Example of 2D kernel density estimation
12:36 - A fast algorithm using linear binning and convolution
15:30 - 2D linear binning
16:18 - KDEpy - software for kernel density estimation in Python
16:51 - References
We do a small tutorial on kernel density estimation (KDE). Mostly for fun, a bit skippable.
Associated Github Commit:
https://github.com/knathanieltucker/bit-o...
We do a small tutorial on kernel density estimation (KDE). Mostly for fun, a bit skippable.
Associated Github Commit:
https://github.com/knathanieltucker/bit-of-data-science-and-scikit-learn/blob/master/notebooks/DensityEstimation.ipynb
Associated Scikit Links:
http://scikit-learn.org/stable/modules/density.html
We do a small tutorial on kernel density estimation (KDE). Mostly for fun, a bit skippable.
Associated Github Commit:
https://github.com/knathanieltucker/bit-of-data-science-and-scikit-learn/blob/master/notebooks/DensityEstimation.ipynb
Associated Scikit Links:
http://scikit-learn.org/stable/modules/density.html
Watch Video to understand the overview of Kernel Density Estimation with an example. And evaluation of Kernel density.
#kerneldensityestimation #kerneldensity ...
Watch Video to understand the overview of Kernel Density Estimation with an example. And evaluation of Kernel density.
#kerneldensityestimation #kerneldensity #whatiskerneldensityestimation #statisticsfordatascience
DataMites is a global institute for data science, machine learning, python, deep learning, tableau and artificial intelligence training courses. DataMites provides ML expert, Python Developer, AI Engineer, Certified Data Scientist and AI Expert courses accredited by IABAC®.
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Watch Video to understand the overview of Kernel Density Estimation with an example. And evaluation of Kernel density.
#kerneldensityestimation #kerneldensity #whatiskerneldensityestimation #statisticsfordatascience
DataMites is a global institute for data science, machine learning, python, deep learning, tableau and artificial intelligence training courses. DataMites provides ML expert, Python Developer, AI Engineer, Certified Data Scientist and AI Expert courses accredited by IABAC®.
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This presentation provides an introduction to kernel density estimation (KDE) techniques for visualizing event densities in maps.
This video presentation was c...
This presentation provides an introduction to kernel density estimation (KDE) techniques for visualizing event densities in maps.
This video presentation was created as part of a peer-reviewed educational series of Reusable Learning Objects (RLOs) on Spatial Analysis.
The full suite of presentations can be accessed at http://ecolearnit.ifas.ufl.edu/.
For more information on the state-wide and online Geomatics program at the University of Florida, please visit us at http://flrec.ifas.ufl.edu/geomatics/ (Fort Lauderdale campus) or http://sfrc.ifas.ufl.edu/geomatics/ (Gainesville campus).
This presentation provides an introduction to kernel density estimation (KDE) techniques for visualizing event densities in maps.
This video presentation was created as part of a peer-reviewed educational series of Reusable Learning Objects (RLOs) on Spatial Analysis.
The full suite of presentations can be accessed at http://ecolearnit.ifas.ufl.edu/.
For more information on the state-wide and online Geomatics program at the University of Florida, please visit us at http://flrec.ifas.ufl.edu/geomatics/ (Fort Lauderdale campus) or http://sfrc.ifas.ufl.edu/geomatics/ (Gainesville campus).
#datascience #kerneldensity #nonparametric #statistics #machinelearning
In this video you will learn about the Kernel Density estimation and how it can be used...
#datascience #kerneldensity #nonparametric #statistics #machinelearning
In this video you will learn about the Kernel Density estimation and how it can be used to fit data (in a non parametric way).
Join this channel to get access to perks:
https://www.youtube.com/channel/UC2XO4HDxzfMOZIV1l795g1Q/join
#finance #machinelearning #datascience
For courses on Credit risk modelling, Market Risk Analytics, Marketing Analytics, Supply chain Analytics and Data Science/ML projects contact [email protected]
For Study Packs : http://analyticuniversity.com/
Complete Data Science Course : http://bit.ly/34Sucmb
Access All Coursera Plus courses @ $400 : https://bit.ly/2ZL51Dd
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Recommended Data Science Books on Amazon :
Python for Data Science: https://geni.us/PythonDataScience
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Data Science from Scratch: https://geni.us/DataSciencefromScratch
Python programming: https://geni.us/LearnPython
Artificial Inteligence: https://geni.us/LearnAI
Data Vizualization : https://geni.us/DataViz
#datascience #kerneldensity #nonparametric #statistics #machinelearning
In this video you will learn about the Kernel Density estimation and how it can be used to fit data (in a non parametric way).
Join this channel to get access to perks:
https://www.youtube.com/channel/UC2XO4HDxzfMOZIV1l795g1Q/join
#finance #machinelearning #datascience
For courses on Credit risk modelling, Market Risk Analytics, Marketing Analytics, Supply chain Analytics and Data Science/ML projects contact [email protected]
For Study Packs : http://analyticuniversity.com/
Complete Data Science Course : http://bit.ly/34Sucmb
Access All Coursera Plus courses @ $400 : https://bit.ly/2ZL51Dd
Discounted courses on Udemy (for $11): http://bit.ly/2LYU6hp
Free access to Skillshare: http://bit.ly/2thklJu
Coursera :
Data Science : http://bit.ly/37nABr6
Data Science Python : http://bit.ly/2ZK5oMm
Recommended Data Science Books on Amazon :
Python for Data Science: https://geni.us/PythonDataScience
R for Data Science : https://geni.us/DataScienceR
Machine Learning using Tensorflow: https://geni.us/MLinTensorflow
Data Science from Scratch: https://geni.us/DataSciencefromScratch
Python programming: https://geni.us/LearnPython
Artificial Inteligence: https://geni.us/LearnAI
Data Vizualization : https://geni.us/DataViz
All about Kernel Density Estimation (KDE) in data science.
Fish Icon:
https://www.freepik.com/search?format=search&icon_color=red&last_filter=icon_color&last_value=red&query=fish&type=icon
0:00 Why do KDE?
2:30 Good vs. Bad KDE
5:35 Intuition and Math
15:09 Bandwidth Selection Theory
19:45 Bandwidth Selection in Practice
This seaborn kdeplot video explains both what the kernel density estimation (KDE) is as well as how to make a kde plot within seaborn. After introducing how a KDE plot is built, I demo Python code for both the univariate and bivariate KDE plots with seaborn. I also discuss what kinds of kernel to choose and how to set bandwidth.
00:00 What is KDE?
1:03 How does KDE work?
2:05 Univariate KDEplot code
4:02 What is bandwidth?
5:35 How to read a bivariate KDEplot
6:09 Bivariate KDEplot code
8:34 Conclusion and up next
Github code:
https://github.com/kimfetti/Videos/blob/master/Seaborn/02_KDEplot.ipynb
#seaborn #dataviz
This video gives a brief, graphical introduction to kernel density estimation. Many plots are shown, all created using Python and the KDEpy library (https://github.com/tommyod/KDEpy). A .pdf of the presentation may be found here: https://github.com/tommyod/KDEpy/blob/master/docs/presentation/kde_presentation.pdf
Contents
00:22 - What is kernel density estimation?
01:27 - Kernel functions
03:27 - Bandwidth
04:30 - Silverman's rule of thumb
05:19 - Improved Sheather Jones
06:10 - Weighting the data
07:30 - Bounded domains and reflections
09:18 - Kernel density estimation in higher dimensions
10:02 - The choice of norm
11:11 - Example of 2D kernel density estimation
12:36 - A fast algorithm using linear binning and convolution
15:30 - 2D linear binning
16:18 - KDEpy - software for kernel density estimation in Python
16:51 - References
We do a small tutorial on kernel density estimation (KDE). Mostly for fun, a bit skippable.
Associated Github Commit:
https://github.com/knathanieltucker/bit-of-data-science-and-scikit-learn/blob/master/notebooks/DensityEstimation.ipynb
Associated Scikit Links:
http://scikit-learn.org/stable/modules/density.html
Watch Video to understand the overview of Kernel Density Estimation with an example. And evaluation of Kernel density.
#kerneldensityestimation #kerneldensity #whatiskerneldensityestimation #statisticsfordatascience
DataMites is a global institute for data science, machine learning, python, deep learning, tableau and artificial intelligence training courses. DataMites provides ML expert, Python Developer, AI Engineer, Certified Data Scientist and AI Expert courses accredited by IABAC®.
For more details visit: https://datamites.com/
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This presentation provides an introduction to kernel density estimation (KDE) techniques for visualizing event densities in maps.
This video presentation was created as part of a peer-reviewed educational series of Reusable Learning Objects (RLOs) on Spatial Analysis.
The full suite of presentations can be accessed at http://ecolearnit.ifas.ufl.edu/.
For more information on the state-wide and online Geomatics program at the University of Florida, please visit us at http://flrec.ifas.ufl.edu/geomatics/ (Fort Lauderdale campus) or http://sfrc.ifas.ufl.edu/geomatics/ (Gainesville campus).
#datascience #kerneldensity #nonparametric #statistics #machinelearning
In this video you will learn about the Kernel Density estimation and how it can be used to fit data (in a non parametric way).
Join this channel to get access to perks:
https://www.youtube.com/channel/UC2XO4HDxzfMOZIV1l795g1Q/join
#finance #machinelearning #datascience
For courses on Credit risk modelling, Market Risk Analytics, Marketing Analytics, Supply chain Analytics and Data Science/ML projects contact [email protected]
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Point pattern analysis (PPA) is the study of the spatial arrangements of points in (usually 2-dimensional) space. The simplest formulation is a set X = {x∈D} where D, which can be called the 'study region,' is a subset of Rn, a n-dimensionalEuclidean space.
Description
The easiest way to visualize a 2-D point pattern is a map of the locations, which is simply a scatterplot but with the provision that the axes are equally scaled. If D is not the boundary of the map then it should also be indicated. An empirical definition of D would be the convex hull of the points, or at least their bounding box, a matrix of the ranges of the coordinates. Another straightforward way to visualize the points is a 2D histogram (sometimes called a quadrats) that bins the points into rectangular regions. A benefit of quadrat analysis is that it forces the analysis to take into account possible scales within which statistically significant inhomogeneities may be occurring.
Modeling
The null model for point patterns is complete spatial randomness (CSR), modeled as a Poisson process in Rn, which implies that the number of points in any arbitrary region A in D will be proportional to the area or volume of A. Exploring models is generally iterative: if CSR is accepted not much more can be said, but if rejected, there are two avenues. First, one must decide which models are worth exploring, such as investigations of clustering, density, trends, etc. And for each of these models there are appropriate scale ranges, from the finest, which essentially mirrors the point pattern, to the coarsest, which aggregates D. It is generally interesting to explore a range of scales within these limits.
A particularly robust model of clustered point patterns is diffusion, which can also be thought of as the trajectory of a point doing a random walk.