A simple visualisation tool for Multiple Sequence Alignment.

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

Calculator for statictics including Theta, D, H, and so on, based on the VCF input.

Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

High-precision TE Annotator

GenMap - Fast and Exact Computation of Genome Mappability

a broadly applicable tool for automated gene identification and retrieval

a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

A more efficient quality control tool for sequencing data

This perl script calculates the CHI statistic and Fst, as well as launches an external XPEHH program.

Fast Neighbor-Joining and other distance-based methods for phylogenetics

Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

Python implementation of barrnap (Bacterial ribosomal RNA predictor)

Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)

Building SuperTranscripts: A linear representation of transcriptome data

The Analysis and Annotation Toolkit

Chunks large genome

genetic variant expressions, annotation, and filtering for great good.

A balanced predictor of protein subcellular localisation in Eukaryotes

Robust individual and aggregate checksums for nucleotide sequences

Python programs for processing GFF3 files

Biological sequence analysis for the modern age.

Fast Gene Set Enrichment Analysis

Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.

PSAURON is a machine learning model for rapid assessment of protein coding gene annotation

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

Minimal but speedy quality control for nanopore reads in Rust 🐻