Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation

🚂 Python API for Emma's Markov Model Algorithms 🚂

Tools for estimating and analyzing Markov state models

Modeling molecular ensembles with scalable data structures and parallel computing

Cryptic pocket prediction using AlphaFold 2

[Deprecated] py2.7 API.Cultor: Another BigData approach to sound collections

Python package for generating Markov state models

PaCS-Toolkit: Optimized software utilities for PaCS-MD and following analysis

Hands-on tutorials for Markov state modeling of MD and EXP data

Data, methods and code for research on the molecular dynamics of HIV glycoprotein gp120

Predicting kinetics of aromatic side-chain flipping using Markov State Model

ChromaWalker

Scripts used for MSM and post-dynamics analysis of PMV simulations

ChromaSEP