ilastik-shell, applets, and workflows to string them together.

ilastik plugin for napari

This directory contains all the elements and structure of the napari-aphid plugin

The scripts uploaded in this repository were developed for the automated processing of fluorescence microscopy images of Nile Red stained microplastics

Python module for multi HYpotheses TRAcking

Detection and segmentation of diseases on wheat leaves.

FIJI Macros, R Scripts

cookiecutter for ilastik object feature plugins

“Novel Marker Distribution Pipeline for Analysis of Cell Based Quantitative Spatial Information”. The aim of this research was to analyse quantitative spatial information and provide intuitive visualisation relating to the identification of cells relative to tissue structure and pathology such as cancer tumour.