Testing differences in cell type proportions from single-cell data.

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

R package for pre-processing of mass and flow cytometry data

Huge-scale, high-performance flow cytometry clustering in Julia

R package for interactive visualization and analysis of single-cell data

Integration of multi-batch cytometry datasets

Official implementation of GateNet

A Python package for dimension reduction and evaluation workflows with CyTOF data.

Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.

Accurate and Efficient Simulation of CyTOF data

HDStIM: High Dimensional Stimulation Immune Mapping

Analysis and visualisation single-cell proteomic data (CyTOF)

Fast auto-cleanup of CyTOF data

Profilling of Peripheral Blood Mononuclear Cells using CyTOF

R Script for reading CyTOF or flow cytometry data (FCS) and generating plots like Cytobank

Plots log histograms of FCS files like CyTOF's PlotViewer program

R script for summarising paramater / channel intensity from flow or mass cytometry data

Analysis scripts for vaccination and challenge study published in Scientific Reports.

Scripts to perform automated pipetting of (1) Barcode Production & Aliquoting and (2) a Robotic Extraction Protocol of Organoids