A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.

Repository containing lists of all published ancient metagenomic (and related) samples and libraries

mapping pipeline for ancient DNA

The Poseidon Community Archive (PCA)

Damage parameter estimation for ancient DNA

Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.

A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.

Coprolite host Identification pipeline

A beginner's guide to aDNA analysis, including scripts to streamline the process.

Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.

Uncertainty estimation toolkit for dimensionality reduction on population genetics data.

A toolset to work with modular genotype databases in the Poseidon format

R Package - Spatiotemporal Ancestry Interpolation and Search

A pipeline for the analysis of sedimentary ancient mtDNA

🗑️🦷 decOM 🦷🗑️

Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"

Statement of the Ethics Discussion Group at the Department of Archaeogenetics (MPI-SHH/MPI-EVA)

Main landing page for getting information about the Poseidon project

Phylogenetic intersection analysis (PIA) from the Allaby lab, University of Warwick: doi.org/10.3389/fevo.2020.00084