Tandem Mass Spectrum Prediction with Graph Transformers

Semi-Supervised Learning for Deep Causal Generative Models

🏅 Collection of Kaggle Solutions and Ideas 🏅

Manim plugin for all things voiceover

PyTorch implementation of the paper "Neural Decomposition: Functional ANOVA with Variational Autoencoders"

Read coverage calculator for metagenomics

Tool to estimate genome quality of microbial eukaryotes

Masked Autoregressive Flow

Anki deck of 8,000 Sentences in Danish with translations and audio, ordered from easiest to hardest.

Code for the paper Semi-Conditional Normalizing Flows for Semi-Supervised Learning

PyTorch Lightning + Hydra. A very user-friendly template for ML experimentation. ⚡🔥⚡

Code for the paper "Semi-Conditional Normalizing Flows for Semi-Supervised Learning"

Scripts to download genomes from the NCBI FTP servers

Fast and memory-efficient exact attention

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

Simple pure Python SAM parser and objects for working with SAM records

UCE is a zero-shot foundation model for single-cell gene expression data

Metagenomic classification using Transformer

Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

Code for reproducing results in "Glow: Generative Flow with Invertible 1x1 Convolutions"

A Flow-based Variational Autoencoder for Molecule Generation

MoFlow: an invertible flow model for generating molecular graphs

Unifying Multimodal Variational Autoencoders (VAEs) in Pytorch

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.