[WIP] First attempt at arXiv template #236

alexpghayes · 2019-06-29T05:43:28Z

Taking a crack #235 but running into issues with the template.

To contribute a new article template to this package, please make sure you have done the following things (note that journalname_article below is only an example name):

Unless you have done it in any other RStudio's projects before, please sign the individual or corporate contributor agreement for a significant pull request (it is fine not to sign it if a PR is only intended to fix a few typos). You can send the signed copy to [email protected].
Add the journalname_article() function to R/article.R if the output format is simple enough, otherwise create a separate R/journalname_article.R.
Add the Pandoc LaTeX template inst/rmarkdown/templates/journalname_article/resources/template.tex.
Add a skeleton article inst/rmarkdown/templates/journalname_article/skeleton/skeleton.Rmd.
Add a description of the template inst/rmarkdown/templates/journalname_article/template.yaml.
Please include the document class file (*.cls) if needed, but please do not include standard LaTeX packages (*.sty) that can be downloaded from CTAN. Please keep the number of new files absolutely minimal, and also make examples minimal (e.g., if you need a .bib example, try to only leave one or two bibliography entries in it, and don't include one hundred items in it without using all of them).

NOTE: I don't think arxiv is on CTAN from a cursory search, but my LaTeX awareness isn't high enough to confirm this. For the time being I'm going operate under the assumption that arxiv.sty is necessary and belongs where it is.

Update Rd and namespace (could be done by devtools::document()).
Update NEWS.
Update README with a link to the newly supported journal.
Add a test to tests/testit/test-formats.R.
Add your name to the list of authors Authors@R in DESCRIPTION. You don't need to bump the package version in DESCRIPTION.

alexpghayes · 2019-06-29T05:50:19Z

Figure out how the template is licensed and if/how to list George Kour in DESCRIPTION

Issues that still need to be resolved: - Multiple citations aren't working - Links have irritating boxes all around them - In general pandoc seems to be doing lots of fancy but potentially undesirable stuff. Can this be turned off?

kevinykuo · 2019-10-15T17:35:07Z

@alexpghayes What's blocking this? Would be really cool to have!

alexpghayes · 2019-10-15T17:36:55Z

Other projects have taken priority / I'm suffering through raw LaTeX for the paper I was going to use this for. Please feel free to finish this off, it's probably going to be a while before I can get to this.

Fairly sure there's bug somewhere and the pdf rendering wasn't quite right when I stopped.

kevinykuo · 2019-11-14T08:03:17Z

Looks mostly fine to me :P

I'll get going on a manuscript and see if I hit anything.

kevinykuo · 2019-11-22T18:51:09Z

OK I'm stuck. Can't seem to figure out how to use numeric style for citations. I've tried both (separately)

\usepackage[style=numeric]{biblatex}

and

\usepackage[numbers]{natbib}

directly in the template to no avail. Let me know if y'all have any tips...

kevinykuo · 2019-11-22T19:07:20Z

Oops, citation_package in the header, all good now.

kevinykuo · 2019-12-04T00:23:16Z

@alexpghayes @yihui I made my way through a short paper, and have made the following changes to make things work:

In template.tex, I added the following block

$for(include-before)$
$include-before$
$endfor$

In my .Rmd yaml, I have

header-includes: |
  \usepackage{makecell}
  \usepackage{amsmath}
  \usepackage[numbers]{natbib}
  \bibliographystyle{abbrvnat}
  \usepackage{graphicx}
  \usepackage{mathtools}
  \usepackage{lmodern}
output: 
  bookdown::pdf_book:
    base_format: rticles::arxiv_article
    citation_package: natbib

Questions: should some of these packages be hardcoded into the template (if so, which ones)? Also, is there a better way to handle bibliography options?

alexpghayes · 2019-12-31T22:47:46Z

I don't know. What are next steps here? Should I close this PR, or incorporate these updates, or...?

kevinykuo · 2020-01-01T01:57:04Z

The most efficient way to proceed is probably for @yihui to opine on whether any changes I made locally should be part of the template, then @alexpghayes can push a commit if needed and we can merge?

yihui

I'm not familiar with the arXiv format, and I'm fine with whatever changes you want to make in template.tex. Please feel free to let me know when you feel this PR is ready, and I'll just merge it. Thank you!

fangzhou-xie · 2020-03-30T15:20:42Z

I believe it would be very nice to have arxiv template for this. I wonder if there is any update on this or is there any guide I can follow to use this arxiv template in R Markdown?

Thank you very much!

kevinykuo · 2020-05-22T06:54:31Z

@yihui Let's merge this and I can open a follow-up PR to add my changes.

yihui

Okay. Thanks @alexpghayes and @kevinykuo!

First attempt at arXiv template

6b3e0b8

alexpghayes added 5 commits June 29, 2019 00:51

Update NEWS and README

ae5a0e7

Add self to DESCRIPTION

6b87a5b

Fix attribution

ff6c1ca

Get the template to compile, with some issues

4678aa8

Issues that still need to be resolved: - Multiple citations aren't working - Links have irritating boxes all around them - In general pandoc seems to be doing lots of fancy but potentially undesirable stuff. Can this be turned off?

Run devtools::document()

1d00ef0

yihui force-pushed the master branch 3 times, most recently from 033a19f to d98786f Compare August 20, 2019 20:57

yihui approved these changes Jan 9, 2020

View reviewed changes

yihui added 2 commits August 3, 2020 15:04

Merge branch 'master' into arxiv

52b283c

Update README.md

648010c

yihui approved these changes Aug 3, 2020

View reviewed changes

yihui added 2 commits August 3, 2020 15:08

move news

87a4d95

add the cslreferences environment like ee529ad

8a5fa69

yihui merged commit 8757713 into rstudio:master Aug 3, 2020

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[WIP] First attempt at arXiv template #236

[WIP] First attempt at arXiv template #236

alexpghayes commented Jun 29, 2019 •

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[WIP] First attempt at arXiv template #236

[WIP] First attempt at arXiv template #236

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